Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004577990.1 |
| length | 339 |
| lncRNA type | inter_gene |
| GC content | 0.45 |
| exon number | 3 |
| gene id | LOC117597047 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 17591839 ~ 17592470 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU78553 | lncRNA | downstream | 16533 | 17574775 ~ 17575306 (-) | False | G66274 |
| XR_003403988.2 | lncRNA | downstream | 138134 | 17446761 ~ 17453705 (-) | True | LOC113539942 |
| TU78235 | lncRNA | downstream | 188024 | 17402622 ~ 17403815 (-) | True | G66056 |
| TU78204 | lncRNA | downstream | 280779 | 17310387 ~ 17311060 (-) | True | G66028 |
| TU78151 | lncRNA | downstream | 282755 | 17254830 ~ 17309084 (-) | True | G65984 |
| TU78577 | lncRNA | upstream | 1278 | 17593748 ~ 17634868 (-) | False | G66281 |
| TU78579 | lncRNA | upstream | 1278 | 17593748 ~ 17634868 (-) | False | G66281 |
| TU78612 | lncRNA | upstream | 93551 | 17686021 ~ 17686234 (-) | True | G66310 |
| TU78613 | lncRNA | upstream | 94416 | 17686886 ~ 17687098 (-) | True | G66311 |
| TU78620 | lncRNA | upstream | 104307 | 17696777 ~ 17701254 (-) | True | G66318 |
| XM_026936033.2 | mRNA | downstream | 38699 | 17540590 ~ 17553140 (-) | False | ache |
| XM_026936034.2 | mRNA | downstream | 38699 | 17540590 ~ 17553140 (-) | True | ache |
| XM_026936035.2 | mRNA | downstream | 38952 | 17540590 ~ 17552887 (-) | False | ache |
| XM_026936075.2 | mRNA | downstream | 55066 | 17533165 ~ 17536773 (-) | False | zgc:92664 |
| XM_026936044.2 | mRNA | upstream | 55760 | 17648230 ~ 17651920 (-) | True | LOC113539922 |
| XM_026936045.2 | mRNA | upstream | 55760 | 17648230 ~ 17651093 (-) | False | LOC113539922 |
| XM_026936078.2 | mRNA | upstream | 145306 | 17737776 ~ 17747135 (-) | True | ap1s1 |
| XM_026936055.2 | mRNA | upstream | 155485 | 17747955 ~ 17751639 (-) | True | serpine1 |
| XM_026936054.2 | mRNA | upstream | 155485 | 17747955 ~ 17751619 (-) | False | serpine1 |
| TU78241 | other | downstream | 147665 | 17439493 ~ 17444174 (-) | False | rnaseka |
| TU78232 | other | downstream | 189375 | 17400594 ~ 17402464 (-) | True | G66053 |
| TU77801 | other | downstream | 986122 | 16604108 ~ 16605717 (-) | False | bmp15 |
| TU77497 | other | downstream | 1168675 | 16419310 ~ 16423164 (-) | True | tnfsf12 |
| XR_003404041.2 | other | downstream | 1520147 | 16055022 ~ 16071692 (-) | False | acox3 |
| TU78578 | other | upstream | 1979 | 17594449 ~ 17634868 (-) | True | G66281 |
| trnas-uga | other | upstream | 178680 | 17771150 ~ 17771231 (-) | True | trnas-uga |
| TU78662 | other | upstream | 199756 | 17792226 ~ 17830126 (-) | False | map11 |
| XR_003404075.1 | other | upstream | 323160 | 17915630 ~ 17915771 (-) | True | LOC113540701 |
| XR_003404117.1 | other | upstream | 1424353 | 19016823 ~ 19016953 (-) | True | LOC113540749 |
