RNA id: TU78577


Basic Information

Item Value
RNA id TU78577
length 3695
lncRNA type inter_gene
GC content 0.46
exon number 5
gene id G66281
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17593748 ~ 17634868 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

NNNNNNNactctcttacaaccactagtgattctgccacaacagctgagagttcagaaacaaccacagaaaaCTCTCTTAcgaccactagtgattctggcacaacagctgagagttcggaaacaaccacagacaactctcttacaaccactagtgactctgccacaacagctgagagCTCGGAaccaaccacagacaactctcttacaactacCCCAGATGCATCCGTAACACCTAGTgtttctggcacaacagctgagagttcagacacaaccacagacaactctcttacaaccactagtgattctggcacaacagctgagagttcagaaacaaccacagacaactctcttacgaccactagtgattctggcacaacagctgagagttcggaaacaaccacagacaactctcttacaaccactagtgactctgccacaacagctgagagctcggaaacaaccacagacaactcttttacaaccactagtgattctggtactacagctgagagttcagacacaaccacagacaactctcttacgaccactagtgattctggcactacagctgagagttcagacacaaccacagacaactctcttacaaccactagtgatcctggcacaacagctgagagttcggaaacaaccacagacaactctcttacaaccactagtgattctggcacaacagctgagggttcagaaacaaccacagacaactctcttacaaccactagtgatcctggcacaacagctgagagttcggaaccaaccacagacaactctgtTACAACTACCCCAGATGCATCCGTAACACCTAGTgtttctggcacaacagctgagagttcggaaacaaccacagacaactctcttacaactacATCAGATGCAACTGCAAcaactagtgattctggcacaacagctgagagttcggaaacaaccacagacaactctcttacatcAACTAGTGATTCTCGCACTACAGCTGAGAGTTTagacacaaccacagacaactctctcacgaccactagtgattctggcacaacagctgagagttcggaaacaaccacagacaactctcttacaaccactagtgattctgggaCAACAGCTGAGGgttcggaaacaaccacagacaactctcttacaactacCCCAGATGCAACCGTAACATCTACTGACTCTGCCACAACAGCTGTGAGTTCAGAAAccaccacagacaactctcttacaaccactagtgattctggcacaacagctgagggtttggaaacaaccacagacaactctcttacaactacCCCAGATGCAACCGCAACAACTACTGACTCTGCCACAACAGCTGTGAGTTCAGAAAccaccacagacaactctctcaCGACCACTAGtcattctggcacaacagctgatagtttggaaacaaccacagacaactctcttacaactacCCCAGATGCAACCGTAACAACTACTGACTCTGCCACAACAGCTGTgagttcagaaacaaccacagacaactctcttacgaccactagtgattctggcacaacagctgagagttcagaaacaaccacagacaactctttTACGACCACCAGTGATTCtcgcacaacagctgagagttcagacacaaccactagtgattctggcacaacagctgagagttcagaatCAACCACAGACAACTTTATTACTACCagtagtgattctggcacaacagctgagagttcggaaacaaccacagacaactctgtTACGACCACTAGTGATTTTGGCActacagctgagagttcagacacaaccacagacaactctcctacaaccactagtgattctggttcaacagctgagagttcacacacaaccacagacaactttggtacaaccactagtgattctagCACAACAGCTGTGAGTTCAGAAACCAcgacagacaactctcttacgaccactagtgattctggcacaacagctgatagtttggaaacaaccacagacaactctcttacaaccactagtgattctggcacaacagctgagagttcagacacaaccacagacaactctgttacaaccactagtgattctggcactacagctgagagttcagacacaaccacagacaactctcttacaaccactagtgattctggcactacagctgagagttcggaaacaaccacagacaactctcttacaactacCCCAGATGCAACCGTAACAACTACTGACTCTGCCACAACAGCTGTgagttcagaaacaaccacagacaactctcttacatccactagtgattctggcacaacagctgagagtttgGAAACAACGACatacaactctcttacaaccactagtgattctggcacaacagctgagagttcggaaacaaccacagacaactctcttacaaccactagtgatactggcacaacagctgagagttcggaaacaaccacagacaactctcttacaaccactagtgattctgccACAACAGCTGAGGgttcggaaacaaccacagacaactctcttacaactacCCCAGATGCAACCGTAACATCTACTGACTCTGCCACAACAGCTGTGAGTTCAGAAAccaccacagacaactctcttacaaccactagtgattctggcacaacagctgagagttcagaaacaaccacagacaactctcttacgaccactagtgattctggcactacagctgagagttcagacacaaccacagacaactctcttacaaccaccaGTGATTCtgccacaacagctgagagttcgaaaacaaccacagacaactctcttacaaccactagtgattctggcactacagctgagagttcagacacaaccacagacaactcccttacaaccactagtgattctgccacaacagctgagagttcggaaccaaccacagacaactctcttacaaccactagtgattctgccacaacagctgagagttcagaaacaaccacagaaaaCTCTCTTAcgaccactagtgattctgccacaacagctgagagttcggaaacaaccacagacaactctcttacaaccactagtgactctgccacaacagctgagagctcagacacaaccacagacaactctcttacaaccactagtgattctggcacaacagctgagagttcagacacaaccacagacaactctcttacaaccactagtgattctgtcacaacagctgagagttcagaaacaaccacagacaactctcttacaaccactagtgattctggcacaacagctgagagatcggaaacaaccacagacaactctcttacaaccactcgTGATTCTgtcacaacagctgagagttcggaaacaaccacagacaactctcttatgaccactagtgattctggcacaacagctgagagttcggaaacaaccacagacaactctctaatgaccactagtgattctgcgACAACAGctgagagttcggaaacaaccacagacaactctcttacaaccactagtgattctggcacaacagctgagagttcagaaacaaccacagacaactctcttacgaCCACCAGTGATTCTGGACAACAGCTGAGAGTCGGAcaagaaacaaccacagacaactctcttacaactacCCCAGATGCAACCAGAACAACTAGTGACTCtgccacaacagctgagagttctgAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577990.1 lncRNA downstream 1278 17591839 ~ 17592470 (-) True LOC117597047
TU78569 lncRNA downstream 1501 17591842 ~ 17592247 (-) False LOC117597047
TU78553 lncRNA downstream 18442 17574775 ~ 17575306 (-) False G66274
XR_003403988.2 lncRNA downstream 140043 17446761 ~ 17453705 (-) True LOC113539942
TU78235 lncRNA downstream 189933 17402622 ~ 17403815 (-) True G66056
TU78612 lncRNA upstream 51153 17686021 ~ 17686234 (-) True G66310
TU78613 lncRNA upstream 52018 17686886 ~ 17687098 (-) True G66311
TU78620 lncRNA upstream 61909 17696777 ~ 17701254 (-) True G66318
TU78672 lncRNA upstream 164254 17799122 ~ 17812526 (-) True G66349
TU78673 lncRNA upstream 166798 17801666 ~ 17809014 (-) True G66350
XM_026936033.2 mRNA downstream 40608 17540590 ~ 17553140 (-) False ache
XM_026936034.2 mRNA downstream 40608 17540590 ~ 17553140 (-) True ache
XM_026936035.2 mRNA downstream 40861 17540590 ~ 17552887 (-) False ache
XM_026936075.2 mRNA downstream 56975 17533165 ~ 17536773 (-) False zgc:92664
XM_026936044.2 mRNA upstream 13362 17648230 ~ 17651920 (-) True LOC113539922
XM_026936045.2 mRNA upstream 13362 17648230 ~ 17651093 (-) False LOC113539922
XM_026936078.2 mRNA upstream 102908 17737776 ~ 17747135 (-) True ap1s1
XM_026936055.2 mRNA upstream 113087 17747955 ~ 17751639 (-) True serpine1
XM_026936054.2 mRNA upstream 113087 17747955 ~ 17751619 (-) False serpine1
TU78241 other downstream 149574 17439493 ~ 17444174 (-) False rnaseka
TU78232 other downstream 191284 17400594 ~ 17402464 (-) True G66053
TU77801 other downstream 988031 16604108 ~ 16605717 (-) False bmp15
TU77497 other downstream 1170584 16419310 ~ 16423164 (-) True tnfsf12
XR_003404041.2 other downstream 1522056 16055022 ~ 16071692 (-) False acox3
trnas-uga other upstream 136282 17771150 ~ 17771231 (-) True trnas-uga
TU78662 other upstream 157358 17792226 ~ 17830126 (-) False map11
XR_003404075.1 other upstream 280762 17915630 ~ 17915771 (-) True LOC113540701
XR_003404117.1 other upstream 1381955 19016823 ~ 19016953 (-) True LOC113540749
XR_003404118.1 other upstream 1382402 19017270 ~ 19017400 (-) True LOC113540750

Expression Profile