RNA id: TU78778


Basic Information

Item Value
RNA id TU78778
length 231
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G66426
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 18111685 ~ 18111915 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGACCGACAGTTTATTGATGTgaagcatctccaaaatggcctTGCTAAGATCCCTGTTTTCAAAATCTTCAGGAAGATTCTCTTCAAACTTCAAGCCACTGACAACATTCAGGGTTATAACCGTATACAAacataaaaatcttttaaactcCATGTTTAAAAGCTTAACACAGATAAAGAGGAGATTCTTGGTCTGTACCTCACAAGATGAAATAGCAGTAGGAAAGCTG

Function

GO:

id name namespace
GO:0061448 connective tissue development biological_process
GO:0001501 skeletal system development biological_process
GO:0051216 cartilage development biological_process
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
ko04151 PI3K-Akt signaling pathway
ko04512 ECM-receptor interaction
ko04510 Focal adhesion
ko04974 Protein digestion and absorption
ko05165 Human papillomavirus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78533 lncRNA upstream 15102 18091588 ~ 18096583 (+) True G66263
TU78493 lncRNA upstream 119438 17990435 ~ 17992247 (+) True G66237
TU78438 lncRNA upstream 136326 17973998 ~ 17975359 (+) True G66186
TU78405 lncRNA upstream 192588 17904611 ~ 17919097 (+) True G66169
TU78403 lncRNA upstream 192588 17911594 ~ 17919097 (+) False G66169
TU78810 lncRNA downstream 65319 18177234 ~ 18177642 (+) True G66452
TU79006 lncRNA downstream 270041 18381956 ~ 18382162 (+) True G66637
TU79026 lncRNA downstream 318647 18430562 ~ 18431136 (+) True G66654
TU79045 lncRNA downstream 379457 18491372 ~ 18491581 (+) True G66670
TU79140 lncRNA downstream 557127 18669042 ~ 18669250 (+) True G66754
XM_026936697.2 mRNA upstream 29255 18049289 ~ 18082430 (+) True rap1gds1
XM_026936698.2 mRNA upstream 29255 18049289 ~ 18082430 (+) False rap1gds1
XM_026936699.2 mRNA upstream 29255 18049290 ~ 18082430 (+) False rap1gds1
XM_026936733.2 mRNA upstream 83634 18021293 ~ 18028051 (+) False spata6l
XM_034303317.1 mRNA downstream 1518 18113433 ~ 18143631 (+) False frem1a
XM_026935846.2 mRNA downstream 1529 18113444 ~ 18143631 (+) True frem1a
XM_034303316.1 mRNA downstream 1558 18113473 ~ 18143631 (+) False frem1a
XM_034304071.1 mRNA downstream 109709 18221624 ~ 18243797 (+) True sec24d
XM_026936118.2 mRNA downstream 314443 18426358 ~ 18430359 (+) True gba3
XR_003403977.2 other upstream 100723 18000158 ~ 18010962 (+) False ctdnep1b
trnat-agu other upstream 347151 17764461 ~ 17764534 (+) True trnat-agu
TU78354 other upstream 491606 17609704 ~ 17620079 (+) True LOC113539940
XR_003404112.1 other upstream 1349810 16761804 ~ 16761875 (+) True LOC113540742
XR_003404114.1 other upstream 1350038 16761572 ~ 16761647 (+) True LOC113540744
XR_004577948.1 other downstream 1529 18113444 ~ 18130505 (+) False frem1a
TU78855 other downstream 85397 18197312 ~ 18208564 (+) True G66492
TU79253 other downstream 744541 18856456 ~ 18858652 (+) True G66864
trnah-gug_4 other downstream 1716396 19828311 ~ 19828382 (+) True trnah-gug_4
trnah-gug_5 other downstream 1716904 19828819 ~ 19828890 (+) True trnah-gug_5

Expression Profile