RNA id: TU78810


Basic Information

Item Value
RNA id TU78810
length 301
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G66452
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 18177234 ~ 18177642 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTAAAAATGGCGAGGAAAGTTTGCTCAAAAGACAGCTAATCAGTATCGCGACATACTCACCATGTGGACGACTTTCCAGGATAATTTCTGTATCTTCTCGCCTCTTTCCGATCGACTTAATCAGCGAATATTCCCAAGCGTCTACATTGTTTCTCGGTGTCAGCTGCTGAAGTGTCAAAGGCGGAAGAGCCGAGTAACTCAGGATTTCAGTATAACACTGAATCGCAGCGTCCCAGTAGGATTGCAGCTCCCTCTacagtgagtgtttgtgtgcgGCGGTAGTGAGCCAAAGTCGACTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78778 lncRNA upstream 65319 18111685 ~ 18111915 (+) True G66426
TU78533 lncRNA upstream 80651 18091588 ~ 18096583 (+) True G66263
TU78493 lncRNA upstream 184987 17990435 ~ 17992247 (+) True G66237
TU78438 lncRNA upstream 201875 17973998 ~ 17975359 (+) True G66186
TU78405 lncRNA upstream 258137 17904611 ~ 17919097 (+) True G66169
TU79006 lncRNA downstream 204314 18381956 ~ 18382162 (+) True G66637
TU79026 lncRNA downstream 252920 18430562 ~ 18431136 (+) True G66654
TU79045 lncRNA downstream 313730 18491372 ~ 18491581 (+) True G66670
TU79140 lncRNA downstream 491400 18669042 ~ 18669250 (+) True G66754
TU79242 lncRNA downstream 650537 18828179 ~ 18833827 (+) True G66855
XM_034303317.1 mRNA upstream 33603 18113433 ~ 18143631 (+) False frem1a
XM_026935846.2 mRNA upstream 33603 18113444 ~ 18143631 (+) True frem1a
XM_034303316.1 mRNA upstream 33603 18113473 ~ 18143631 (+) False frem1a
XM_026936697.2 mRNA upstream 94804 18049289 ~ 18082430 (+) True rap1gds1
XM_026936698.2 mRNA upstream 94804 18049289 ~ 18082430 (+) False rap1gds1
XM_034304071.1 mRNA downstream 43982 18221624 ~ 18243797 (+) True sec24d
XM_026936118.2 mRNA downstream 248716 18426358 ~ 18430359 (+) True gba3
XM_026936168.2 mRNA downstream 671523 18849165 ~ 18851580 (+) True sod3a
XM_034303649.1 mRNA downstream 773405 18951047 ~ 18954000 (+) True ppp1r15a
XM_034303737.1 mRNA downstream 993057 19170699 ~ 19327377 (+) False LOC113540597
XR_004577948.1 other upstream 46729 18113444 ~ 18130505 (+) False frem1a
XR_003403977.2 other upstream 166272 18000158 ~ 18010962 (+) False ctdnep1b
trnat-agu other upstream 412700 17764461 ~ 17764534 (+) True trnat-agu
TU78354 other upstream 557155 17609704 ~ 17620079 (+) True LOC113539940
XR_003404112.1 other upstream 1415359 16761804 ~ 16761875 (+) True LOC113540742
TU78855 other downstream 19670 18197312 ~ 18208564 (+) True G66492
TU79253 other downstream 678814 18856456 ~ 18858652 (+) True G66864
trnah-gug_4 other downstream 1650669 19828311 ~ 19828382 (+) True trnah-gug_4
trnah-gug_5 other downstream 1651177 19828819 ~ 19828890 (+) True trnah-gug_5
trnar-ucu_2 other downstream 1923383 20101025 ~ 20101098 (+) True trnar-ucu_2

Expression Profile