RNA id: TU79006


Basic Information

Item Value
RNA id TU79006
length 207
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G66637
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 18381956 ~ 18382162 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTCCCTGTTATGTTAGCTAATGtctgtattattaaaataattattataaataaatactgtctgtttactgtctgtgtggagtttctgtgcatacTCTTCCCTGTgcggatttcctctgggttctccggtttcctcccacctctcgaaacatgccagtagatggactgggaagcccagtgttcccaggattggCTGGTGACCCTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78810 lncRNA upstream 204314 18177234 ~ 18177642 (+) True G66452
TU78778 lncRNA upstream 270041 18111685 ~ 18111915 (+) True G66426
TU78533 lncRNA upstream 285373 18091588 ~ 18096583 (+) True G66263
TU78493 lncRNA upstream 389709 17990435 ~ 17992247 (+) True G66237
TU78438 lncRNA upstream 406597 17973998 ~ 17975359 (+) True G66186
TU79026 lncRNA downstream 48400 18430562 ~ 18431136 (+) True G66654
TU79045 lncRNA downstream 109210 18491372 ~ 18491581 (+) True G66670
TU79140 lncRNA downstream 286880 18669042 ~ 18669250 (+) True G66754
TU79242 lncRNA downstream 446017 18828179 ~ 18833827 (+) True G66855
TU79254 lncRNA downstream 476880 18859042 ~ 18862711 (+) False G66865
XM_034304071.1 mRNA upstream 138159 18221624 ~ 18243797 (+) True sec24d
XM_034303317.1 mRNA upstream 238325 18113433 ~ 18143631 (+) False frem1a
XM_026935846.2 mRNA upstream 238325 18113444 ~ 18143631 (+) True frem1a
XM_034303316.1 mRNA upstream 238325 18113473 ~ 18143631 (+) False frem1a
XM_026936698.2 mRNA upstream 299526 18049289 ~ 18082430 (+) False rap1gds1
XM_026936118.2 mRNA downstream 44196 18426358 ~ 18430359 (+) True gba3
XM_026936168.2 mRNA downstream 467003 18849165 ~ 18851580 (+) True sod3a
XM_034303649.1 mRNA downstream 568885 18951047 ~ 18954000 (+) True ppp1r15a
XM_034303737.1 mRNA downstream 788537 19170699 ~ 19327377 (+) False LOC113540597
XM_026937175.2 mRNA downstream 788537 19170699 ~ 19327377 (+) True LOC113540597
TU78855 other upstream 173392 18197312 ~ 18208564 (+) True G66492
XR_004577948.1 other upstream 251451 18113444 ~ 18130505 (+) False frem1a
XR_003403977.2 other upstream 370994 18000158 ~ 18010962 (+) False ctdnep1b
trnat-agu other upstream 617422 17764461 ~ 17764534 (+) True trnat-agu
TU78354 other upstream 761877 17609704 ~ 17620079 (+) True LOC113539940
TU79253 other downstream 474294 18856456 ~ 18858652 (+) True G66864
trnah-gug_4 other downstream 1446149 19828311 ~ 19828382 (+) True trnah-gug_4
trnah-gug_5 other downstream 1446657 19828819 ~ 19828890 (+) True trnah-gug_5
trnar-ucu_2 other downstream 1718863 20101025 ~ 20101098 (+) True trnar-ucu_2
TU80337 other downstream 1765633 20147795 ~ 20154771 (+) False fcer1g

Expression Profile