RNA id: TU79647


Basic Information

Item Value
RNA id TU79647
length 2141
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G67208
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 19373556 ~ 19375720 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAAACATGGCTCAgtgactctgtctctctctgccctgtTGAGAATAATAAGTCAAAAAGGCAGCCTgctgtttcttcctcatatggAAGAAGCTTGGCACAACTTTGAGCAGGATCCTCTGGGACCATGCTAATGAAGGCACACAGTCCTGTAGCGGTGGATTCAAAAAGCATCACAGGTTCTTTTCATCTCGACTGGGTGCTTAATAAGTCTGCAGTGTTGGGGTGGGAACTGTGGAGTAGCCCTGTAACCATCTagtgtttctctttttattgAAGTGCACACACTAAATCACAGAGCAGGCCTTTCCGTGAGAAACAGATTTGACTAACTGAGCCATCTTTGCAGTCAAAATACATGTGGTCCAAAGCAGGGCATGAAGTAActgtgatgtgtatatatacacctcACACCGTAAGACTCACTTGCTAACGTCAGTAATCTGAGCTCTGGGTCTTTATATTGCCCAAACAATAGAGAATCATGAACTGtatagaaaaaatagaaatggtTGCAACAAAACATAGCAAGTTTGCAAATCATGACTGCCCATAATCTGACATTTGTCACAACAATAACAGCAATGACCTCATATGTGGTGGATCATTTAGTCTAGACAATATCAAAGGCAGAACACCTTTTCCTTGAAGAACTGCAGACACGTTTCCCCAAGCTTGAGTAATGACAGGCGGAGAAATGGCCAGCTGTGGCTGAATCTGGGCCAGCAGGAAggatttggaagaaaaaaatgagccTGCTTCTGCCTCCGCTGAGTATTACACACTGATCTGGGGTCAGTGTTCTCTCAGTGCATGTAAAAAAGTGAGAAACATGCTGTCCTGTGATTATAAGAAGGAATTTTAATCTCAATATATATGCCGTCTCATCCAAGGTGCCATCATACCTTAGTGCAGTTAGTGTGATTTAAGAATCGCACTAATTTTAGCATGAAATAAAACACGGGGGAAAAAACAACTTGAGGGAGTTAAAGTTACAGCGCAGTGGAGAAGTTGAGATCATAAttggctctgtgtttgtgtgtgtgtgtgtgtgtgtgtaaggaaggAGAGGCGGGGAAATCAGTGTGGTCAGTCTGAGGTTATTGGCATAGTGAACTTGGTAAACATTGCTTTAGAGACATGTGAATTAATTGTTTGTGGCTGTTGAAAACATTTGGAATATTCAGAGGTCTTGCTGAGAATGTACAAGGTCATGTTCgctgctctctttctttctgtggaTAAAACGAGACAATCTGAAACCAACAGACGTCTTCCATTAACATCCTTCCTGCGTTCTCTTCTGCAAAGCAGCTTGACACGGACACACATGTGACGCCTTTGTACACTAGGAATCACAGTGAATGTTTTTACTTTCCCTAAGTGTTGAAATGTTCCACGTATGAAATCCTATGACATTTCTGAAATGCCTCAGATCAGCTGGCTGAGCTGCTATATCTGAGTATATATACTGCATCATCAATGTGACAGATAGGCACATCAGGGAGCCAGATGCAAACCCTACGCTTTCTCTGTAGCCTGTATGGCATCAGACCCAGTGCATGCTGCCAAAAGATAGAGAATGGCCGTGGGCTCTGGCCAACCAAAGACCTTATACTGCCCACACACATCTGTCGAGCTGTTACCTGAGAAAGCGATAATACACAGTGACTAAGACTCTTTCCCCTCCCTGTGACAGTACTCTCTGACACTGACTCTATCTGACAGGTCTCTTCTCACATCATCTGAGGTGGAACTTTTGTTTGAATTTACCTTTGGGCTTTACTTGGCACCGCATGCTCAGAATAGGAAGTACCTTTATTTCCATTCTGAGAGTGTCATGATCGAAGATGACGGAATTCCCTTATATTAGTTAAGGTCACGATAGTAAATGTCATGCTGGGATGCTGTATATAAATGTGAGGATGTAATATTCATTTGTGCATTCATTTTATCTATAAACTAGTACTCTTGTAAATATATCGATTAGCAGTAAACAATATGAGCTCATCTACTAAATGTGTTACCTGTCtacatttttctcttcttttgaaaatgtgcagtgccttgcataagtattcacccccttgcaCTTTTCCACAATTTGTAGTTCCACCTTCaactaaaattaatttaatttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79640 lncRNA upstream 21652 19345844 ~ 19351904 (+) True G67205
TU79644 lncRNA upstream 21652 19345844 ~ 19351904 (+) False G67205
TU79518 lncRNA upstream 250932 19120859 ~ 19122624 (+) True LOC113540244
XR_003404012.2 lncRNA upstream 251536 19120838 ~ 19122020 (+) False LOC113540244
TU79287 lncRNA upstream 462159 18911057 ~ 18911397 (+) True G66887
TU79649 lncRNA downstream 6833 19382553 ~ 19451392 (+) True G67209
TU79674 lncRNA downstream 98775 19474495 ~ 19475474 (+) True G67227
TU79687 lncRNA downstream 123489 19499209 ~ 19501228 (+) True G67236
TU79722 lncRNA downstream 168326 19544046 ~ 19641619 (+) True G67262
TU79734 lncRNA downstream 242962 19618682 ~ 19621531 (+) True G67271
XM_026936566.2 mRNA upstream 801 19354380 ~ 19372755 (+) True trmt44
XM_026937227.2 mRNA upstream 34849 19328031 ~ 19338707 (+) True etnppl
XM_034303738.1 mRNA upstream 50681 19170699 ~ 19322875 (+) False LOC113540597
XM_026937115.2 mRNA downstream 12885 19388605 ~ 19393118 (+) True gpr78b
XM_034303203.1 mRNA downstream 18435 19394155 ~ 19405210 (+) False LOC113540663
XM_026937261.2 mRNA downstream 18440 19394160 ~ 19407627 (+) True LOC113540663
XM_034303433.1 mRNA downstream 79306 19455026 ~ 19470962 (+) True LOC113540575
XM_026936525.2 mRNA downstream 105335 19481055 ~ 19485146 (+) True LOC113540207
TU79253 other upstream 514904 18856456 ~ 18858652 (+) True G66864
TU78855 other upstream 1164992 18197312 ~ 18208564 (+) True G66492
XR_004577948.1 other upstream 1243051 18113444 ~ 18130505 (+) False frem1a
XR_003403977.2 other upstream 1362594 18000158 ~ 18010962 (+) False ctdnep1b
trnat-agu other upstream 1609022 17764461 ~ 17764534 (+) True trnat-agu
trnah-gug_4 other downstream 452591 19828311 ~ 19828382 (+) True trnah-gug_4
trnah-gug_5 other downstream 453099 19828819 ~ 19828890 (+) True trnah-gug_5
trnar-ucu_2 other downstream 725305 20101025 ~ 20101098 (+) True trnar-ucu_2
TU80337 other downstream 772075 20147795 ~ 20154771 (+) False fcer1g
trnaa-cgc other downstream 976694 20352414 ~ 20352485 (+) True trnaa-cgc

Expression Profile