Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU79674 |
| length | 555 |
| lncRNA type | inter_gene |
| GC content | 0.57 |
| exon number | 3 |
| gene id | G67227 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 19474495 ~ 19475474 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU79649 | lncRNA | upstream | 23103 | 19382553 ~ 19451392 (+) | True | G67209 |
| TU79647 | lncRNA | upstream | 98775 | 19373556 ~ 19375720 (+) | True | G67208 |
| TU79640 | lncRNA | upstream | 122591 | 19345844 ~ 19351904 (+) | True | G67205 |
| TU79644 | lncRNA | upstream | 122591 | 19345844 ~ 19351904 (+) | False | G67205 |
| TU79518 | lncRNA | upstream | 351871 | 19120859 ~ 19122624 (+) | True | LOC113540244 |
| TU79687 | lncRNA | downstream | 23735 | 19499209 ~ 19501228 (+) | True | G67236 |
| TU79722 | lncRNA | downstream | 68572 | 19544046 ~ 19641619 (+) | True | G67262 |
| TU79734 | lncRNA | downstream | 143208 | 19618682 ~ 19621531 (+) | True | G67271 |
| TU79757 | lncRNA | downstream | 268166 | 19743640 ~ 19750374 (+) | False | G67291 |
| TU79758 | lncRNA | downstream | 268166 | 19743640 ~ 19760630 (+) | True | G67291 |
| XM_034303433.1 | mRNA | upstream | 3533 | 19455026 ~ 19470962 (+) | True | LOC113540575 |
| XM_026937261.2 | mRNA | upstream | 66868 | 19394160 ~ 19407627 (+) | True | LOC113540663 |
| XM_034303203.1 | mRNA | upstream | 69285 | 19394155 ~ 19405210 (+) | False | LOC113540663 |
| XM_026937115.2 | mRNA | upstream | 81377 | 19388605 ~ 19393118 (+) | True | gpr78b |
| XM_026936566.2 | mRNA | upstream | 101740 | 19354380 ~ 19372755 (+) | True | trmt44 |
| XM_026936525.2 | mRNA | downstream | 5581 | 19481055 ~ 19485146 (+) | True | LOC113540207 |
| XM_026936526.2 | mRNA | downstream | 5581 | 19481055 ~ 19485146 (+) | False | LOC113540207 |
| XM_026936523.2 | mRNA | downstream | 5581 | 19481055 ~ 19484110 (+) | False | LOC113540207 |
| XM_034303403.1 | mRNA | downstream | 176423 | 19651897 ~ 19694516 (+) | True | LOC113539894 |
| XM_026935817.2 | mRNA | downstream | 391677 | 19867151 ~ 19872149 (+) | True | LOC113539773 |
| TU79253 | other | upstream | 615843 | 18856456 ~ 18858652 (+) | True | G66864 |
| TU78855 | other | upstream | 1265931 | 18197312 ~ 18208564 (+) | True | G66492 |
| XR_004577948.1 | other | upstream | 1343990 | 18113444 ~ 18130505 (+) | False | frem1a |
| XR_003403977.2 | other | upstream | 1463533 | 18000158 ~ 18010962 (+) | False | ctdnep1b |
| trnat-agu | other | upstream | 1709961 | 17764461 ~ 17764534 (+) | True | trnat-agu |
| trnah-gug_4 | other | downstream | 352837 | 19828311 ~ 19828382 (+) | True | trnah-gug_4 |
| trnah-gug_5 | other | downstream | 353345 | 19828819 ~ 19828890 (+) | True | trnah-gug_5 |
| trnar-ucu_2 | other | downstream | 625551 | 20101025 ~ 20101098 (+) | True | trnar-ucu_2 |
| TU80337 | other | downstream | 672321 | 20147795 ~ 20154771 (+) | False | fcer1g |
| trnaa-cgc | other | downstream | 876940 | 20352414 ~ 20352485 (+) | True | trnaa-cgc |
