RNA id: TU79734


Basic Information

Item Value
RNA id TU79734
length 2796
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G67271
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 19618682 ~ 19621531 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATCTTGTctaaaacatcttaaaatatcatgtaaaaaAGTGTCTTGCCCAAGGAATCTTAATGTATTTTCTCTAAATACGCTTGACCAAAGTACCTGAAAGTATCTTTTCCAAAGTGTCTTATCCGAGGTATCTTAGAGTATCATAGAGTATCTTAGCGTTCTTGTCCAAGGTAACCTAAAATATCTTGTCCAAAGTACTTTAAAGTATCTTGTGCAAAGTATTAAagtgttgttcttcttcttttggctgctcccgttagtgGTCTCCACAGCGAATCATTGGTTTGCATATTTGATTAGGcagtttttacgctggatgcccttgctgatgcaaccctccccaagtttatccgggcttgggactgtcttgtgcaaccccagtggctggggtggGGCCCTGGCTGAGAATTGAACCCGGGCTGCCGCGGTAAcgactagtcctccagggacctccAAAGTATCAAAGTGTCTTGTCCAAAGTGTCTTGTCCAAAGTGTCTTGTCCAAAGTGTCTTGtgtgttttttttttttaaatatctttcatCCCTGCCCAAGTGTGCTGTCATTATATTTAAACTCACAACAAAAAATGGACTTTCTTTCGGTTTACTACCCCCCTTGCCTTGCTTGATGGACAGCCAGTAAATAGCTAAGAACCTTCTACTGTTCTGAAATATCCTGAATGTTCCAGGTGTTCAGAAGTTCAGCTCGGGGGGAAGAATCAGTTTTGACAAAGCATAAAGCTTACATGGTTTCAAGTTCTCTGAAGTGCTCAGTCAGAGACAGACCACTTAAATCTAATTAGCATTAGAACTGAGTAATGGCATGTATTGATTGTGAAATGCTCACTATTGACAAAAGCTCACAAAATACTCAACAAACACAAGATTGCATTTCCATAAAAATGTACAAGCCCATAGCATAGACTGTAACCAGAAATAAAGCAATAGACCTCCAAACACTCTGTTTCGCTCTGCCACATTAAtatgcacataaacacaataCAAGGAAATACAATTCCAAGAAGCATGAATTGCTTTTAACCACAAGCCAAGTTTTCATTTCAAACAAGTCATGTGTGGTCTGAATACGGACCGACAATACGTGTAATCCAATAATGGTAAATGGTAAACATACTGAAACAGGCCAATcatcttttatattttcctcTTACTGCAGATCTTGCAAAAGCGACGGTGCAAGGTGCAACTGCAATATGCAGCAGCGGTAATGGCTTGgcaaatttaaaaagtcaccTGAACAAACAGTGGTAATGCAGTCCGCTGATGGCATGGCAACAACATGAAAGAGCTTCTAATATGAGGGAGGGAGAACAAGCACCTGAGATAAACCCCTAAACTGCACATTCACAAAATACCATTTAACAGCAGGCAAATTCATGATCTCGATTTGGTTTTCCATGCAATTTCATTCAAGAACGCCGCTGATTCTGCCTCATTTGCACTCAACCACTGCATTAAATAGAGTGCCACTATTCCTCCTTATTCGCTGTGACTAATGACCATAGACGGTGTAATACATAACCTCTGCCTACACCTGAAGTGCTGCGAATCACAGAGTCTGCAAAAGAAAAAGCGGAGAAACAACATGAACTGTGAGAGAATATTAAAATGTCCCAAACCCCTGCTGTAGTGAGCAGGAACAAATTTGCCCTAAACAAAacggacacagggagaacatgcaaaactcccccctgagctcaggactgaaccgaGGACCCTGAAGCTGCGAGGCAGCAATGATGTTTAATTCGGCTGGACCGAATATTAAATTCCCTATtactaaacaaaagaaatgtataaatgagaCGTGTGTGTGAAGGCTGAACACACAGCCTCGCTTCAAATTCACCAGTGACACGTAACGTACACAGCACGTTTATCAGGACCGATTTTCACAAACGGCTTATGAGATGTTCtcagcagaaaagcagaaacagaGACTAATTATTTAACCATTTCTGGCTGTAACTAAACTATTTTCAATCAGGATTTTCCCTACTGCGGTGCAAATGTACAGTAAATCAGTAATCAAAATGCATATTAGCCATCATCCTCTAGGAACATGGACCTACCACGCTCTGCTACAGTAATgtaagaataaatataaatattcttccTTATAAAATTAGCATAAAAAATCTCACACATAAGAATTGTGATCTCAATTCTAAGCCGAATAATCGTGATCCCTATTTCGTCAAGACACAGCGAGCACTGAGGCGTGCTTCATTTGCATGACGTTAAGCTCATATGTAGACCAGAAGAAACTGTTAAAACTAAAGCTCCTGTCCAACGCTAAAGCCAGCTTCCTCAGGAGTCATTTGCATGGAATCCTGTTCCCCCCAAATTAgcagctagcatgctaacaggCAAAGCAGATTCCATTACATTCCCTGAAGTTAAGCTTCTCTGATCCGTTTATGCAAGTCATAGGCTGAGCGGGTTAGCCGCCTTTCTCTGGAGCAAATCTGAAACATGCAATAAGCTAATGCAAGAGTAATTTAATCAGAGCTTGTCGAGACCATGACTTCACTCTCTAATATTGCAGGTTGTGTTTTCAGACAATAGCTTCATGCAATGTTTCCAACACAAAGCTAATGTCACATTTGGCTCAAGGCATCAGGTGAATGAAGAACATTTTGACGTCTTGTAACGAcactaatgtattttaaaacatgTGGGTCAAGACTTGAAGACATTAGAGATTAAGAcgataaaataaaagcataaaatttatatccacAACAATCTTATAtcagatataaagtgaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79687 lncRNA upstream 117454 19499209 ~ 19501228 (+) True G67236
TU79674 lncRNA upstream 143208 19474495 ~ 19475474 (+) True G67227
TU79649 lncRNA upstream 167290 19382553 ~ 19451392 (+) True G67209
TU79647 lncRNA upstream 242962 19373556 ~ 19375720 (+) True G67208
TU79644 lncRNA upstream 266778 19345844 ~ 19351904 (+) False G67205
TU79757 lncRNA downstream 122109 19743640 ~ 19750374 (+) False G67291
TU79758 lncRNA downstream 122109 19743640 ~ 19760630 (+) True G67291
TU79755 lncRNA downstream 142729 19764260 ~ 19766422 (+) True G67289
TU79753 lncRNA downstream 190433 19811964 ~ 19822848 (+) True G67287
XR_004577989.1 lncRNA downstream 199647 19821178 ~ 19824259 (+) True LOC117597044
XM_026936525.2 mRNA upstream 133536 19481055 ~ 19485146 (+) True LOC113540207
XM_026936526.2 mRNA upstream 133536 19481055 ~ 19485146 (+) False LOC113540207
XM_026936523.2 mRNA upstream 134572 19481055 ~ 19484110 (+) False LOC113540207
XM_034303433.1 mRNA upstream 147720 19455026 ~ 19470962 (+) True LOC113540575
XM_026937261.2 mRNA upstream 211055 19394160 ~ 19407627 (+) True LOC113540663
XM_034303403.1 mRNA downstream 30366 19651897 ~ 19694516 (+) True LOC113539894
XM_026935817.2 mRNA downstream 245620 19867151 ~ 19872149 (+) True LOC113539773
XM_026936965.2 mRNA downstream 260397 19881928 ~ 19886701 (+) True slx1b
XM_026937193.2 mRNA downstream 322209 19943740 ~ 19953223 (+) True si:ch73-71d17.2
XM_026937262.2 mRNA downstream 349780 19971311 ~ 19983277 (+) True ntn4
TU79253 other upstream 760030 18856456 ~ 18858652 (+) True G66864
TU78855 other upstream 1410118 18197312 ~ 18208564 (+) True G66492
XR_004577948.1 other upstream 1488177 18113444 ~ 18130505 (+) False frem1a
XR_003403977.2 other upstream 1607720 18000158 ~ 18010962 (+) False ctdnep1b
trnat-agu other upstream 1854148 17764461 ~ 17764534 (+) True trnat-agu
trnah-gug_4 other downstream 206780 19828311 ~ 19828382 (+) True trnah-gug_4
trnah-gug_5 other downstream 207288 19828819 ~ 19828890 (+) True trnah-gug_5
trnar-ucu_2 other downstream 479494 20101025 ~ 20101098 (+) True trnar-ucu_2
TU80337 other downstream 526264 20147795 ~ 20154771 (+) False fcer1g
trnaa-cgc other downstream 730883 20352414 ~ 20352485 (+) True trnaa-cgc

Expression Profile