RNA id: TU79755


Basic Information

Item Value
RNA id TU79755
length 2138
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G67289
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 19764260 ~ 19766422 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTAGTAACAGCCCCCAAGTGCTCTACCTCGCCCAGTCTCGCAACCATTTCTCTACAATTGGCTCTGTGTGGATATATAACTGTGACATCACAGGGCAGAAACGAGAGAAACCCCATTCCCCAAAGCAGAATTAGAAGCATCaagtatttcatttcatttttcttcttcgtCATGAGCATTTCAATGTGTTGTGGTCTAATAACTGCATTTCTTTAAGTGATAGTGACATTTCAGTGCACACAAGAAGAGAGTTGAATTTTTGGGTGTGTGTCAGACTGTAACTGAAACTAAAGTCAAAGTATTCAGAGGAGGTTTGTGGACACGTGGTGGCCTGGATACCCCTGTGGCCCGAAACTGTTATAAGCTCTGATTTAGACTTCTGCTGGACTTCGGCCAAGCAGCGAGCAAGGTGGCACACTCCTGTTCATTCTACCCTGACCAAAACGGATGCTTTGAACAGATTTACGATGCTAAATGAATCaaatcttctttttttgcactttcCACACCTACTCCAGTTTCAAGAATCATAAAACGGTGCTATCAAAATTAATTTACACTCAGGAGGAAAGAAGGTAACTGTCAAATCTCGACAGCGTCACACTGAAAGCGAGGGAGTATAAATTTCCCTTAAGAAAATGTTTGGACAAATCGACTTTTTTAGGGGATTTTGTGAATATAATTAAGATTGACTGAGGCTGGCTGAGTTGCTTGGCAGAGACAACATAAAAAGTGGTTTCAGACGTGATTCAGCGAGAGTCTGACAGTCAGTCATCAGAGTGGAGTCAGTGTAAGCGCAGCAGGCAGGACGCTGGCCAGAGCTTCATTACGAAACTGTTTAAACAAACCAGCCCACCCATAATAACAGAAAAACAATAACTAATTTTATACGAATTCTTTCGACTTCTTTTAAACTCCCAAGACGTCTCTGCAGAAACAGGTACATTCCTCACTCGTGTACCTACTACTTTTACTatgatatttattgtatttgctGAATAATTAATGATAGTTACTAAATAATGTGGTTTAAGATGAATATCTGTATAACAGCCTAGGAGTTAAAGAGGTTAAGCATTTTTAATAGGTGTTGGAGTAACCACATAGTGAATACAATTTCAAAAATCACTATTTTCGCTATGTATTGAATCTTATTTTGTAAGTAATGTGTTAAAACTCAGCTACAGCTACTAAAGGTACTACAGTGCTAACTTCACAGGGTAAAGCTGCAAAGCCGAGTGCTCTTATGCGAATTAAGCCAATGAGCAGTGGCTTTCCTGGTTCAAACGTTTATTGACTGGCTTTTGTAGATGCCCCCTCCCTTCCTCTGTTCCTACTCTCTTCATTTATCCCAGCAAATGCTGTTACCGTGGCATTCCTGAGGTCGCCGCTCTGCCTGGCTCTCTGCTTTAGAGCTAAATGAGAGGAGCCAACAGAGCAAACCTCTAATGATTTTAGCTAAACTGGGTCAATTACTGTACCAAAATAACGTGTCCCGTTAATCAAACTCGAGCCCGACTCAGAGGGAATAATAGTGAGGGGGGACAGAATACACACCAAGAGAAAAACAGACGCGGGATGAAAGAGCAAGTTGGagaaaaggcagaaagagagggaaCAACTTGATAAATCCTGAACAAAGTTTTGACAGTTGAATAATGGCTGGCTCGTTTCATTTTAAAGACTGGCTGGAAGAAATGAACCAGCCTCAACTTGTAAGTGTATCACACACATGCTACTACATGACAGAAAGTACGGGTTTGTGCAATTTTGGGCTTCTGTGCACTAAACATGTTAATGCATGTCGTTCtgttggacttttttttttttgtggctggATGTGTGCAAGGAAAGAAGACATTCTtctgtacacctacacacatcCATAGACATGATCAGAGTTTCTAAGCCTTCCCCACTACAGCATGTTGGTTGTGAGTGTTAGGAAGCCGTGCTCACCTGGCTGCTCTGAGGGCTGGACGGATCGTAAGGCTGAACGTAGTTCTTGAGCGAGTCGGCTGGGTTGAGGTGCGGAGGGTAACGGATGGTAGGATGGGAGAAATAGggtgatggagcaggaggaaggATGGCAGGAGCTGAAAACTGCAGTGGGGAGTGAGGGGGAGGACTCCTCGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79758 lncRNA upstream 3630 19743640 ~ 19760630 (+) True G67291
TU79757 lncRNA upstream 13886 19743640 ~ 19750374 (+) False G67291
TU79722 lncRNA upstream 122641 19544046 ~ 19641619 (+) True G67262
TU79734 lncRNA upstream 142729 19618682 ~ 19621531 (+) True G67271
TU79687 lncRNA upstream 263032 19499209 ~ 19501228 (+) True G67236
TU79753 lncRNA downstream 45542 19811964 ~ 19822848 (+) True G67287
XR_004577989.1 lncRNA downstream 54756 19821178 ~ 19824259 (+) True LOC117597044
TU80083 lncRNA downstream 113556 19879978 ~ 19881739 (+) True G67579
TU80087 lncRNA downstream 121756 19888178 ~ 19888725 (+) True G67582
TU80110 lncRNA downstream 145317 19911739 ~ 19914403 (+) True G67594
XM_034303403.1 mRNA upstream 69744 19651897 ~ 19694516 (+) True LOC113539894
XM_026936525.2 mRNA upstream 279114 19481055 ~ 19485146 (+) True LOC113540207
XM_026936526.2 mRNA upstream 279114 19481055 ~ 19485146 (+) False LOC113540207
XM_026936523.2 mRNA upstream 280150 19481055 ~ 19484110 (+) False LOC113540207
XM_034303433.1 mRNA upstream 293298 19455026 ~ 19470962 (+) True LOC113540575
XM_026935817.2 mRNA downstream 100729 19867151 ~ 19872149 (+) True LOC113539773
XM_026936965.2 mRNA downstream 115506 19881928 ~ 19886701 (+) True slx1b
XM_026937193.2 mRNA downstream 177318 19943740 ~ 19953223 (+) True si:ch73-71d17.2
XM_026937262.2 mRNA downstream 204889 19971311 ~ 19983277 (+) True ntn4
XM_026937321.2 mRNA downstream 224262 19990684 ~ 20067220 (+) True dock11
TU79253 other upstream 905608 18856456 ~ 18858652 (+) True G66864
TU78855 other upstream 1555696 18197312 ~ 18208564 (+) True G66492
XR_004577948.1 other upstream 1633755 18113444 ~ 18130505 (+) False frem1a
XR_003403977.2 other upstream 1753298 18000158 ~ 18010962 (+) False ctdnep1b
trnat-agu other upstream 1999726 17764461 ~ 17764534 (+) True trnat-agu
trnah-gug_4 other downstream 61889 19828311 ~ 19828382 (+) True trnah-gug_4
trnah-gug_5 other downstream 62397 19828819 ~ 19828890 (+) True trnah-gug_5
trnar-ucu_2 other downstream 334603 20101025 ~ 20101098 (+) True trnar-ucu_2
TU80337 other downstream 381373 20147795 ~ 20154771 (+) False fcer1g
trnaa-cgc other downstream 585992 20352414 ~ 20352485 (+) True trnaa-cgc

Expression Profile