RNA id: TU80110


Basic Information

Item Value
RNA id TU80110
length 1600
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G67594
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 19911739 ~ 19914403 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAACATATTCCCTTTATTTTTTCTCAAAGTATCTTTTCAGAGATACATCACCAACTGTTGGAAAAATTTCAACCAGACAGCTTTACATACACAAAGTACAAGCGCAACATCTTCAAGCTAAATTTGCATATAATAAAAAGAACTAGAGATCATCATCcggtttaatatttaaaaataaggtgCTGTCAGTTTTGctccaattttttttcaagaccCCTCCGTCCAACCtaatgctttttttattatagcaGAAATCCCTAAAATCCTTTTGATCAAGACAGGAAACCTCATTTGCAATGTACATGCAGATATCAAAACCTTCCCTTATAACCTTAATGCTTGTAATATCAGTGCATAGGATTTAGAGACTCTATATTCCTGAGGATAGGTCACTTTAAAATGGCACAAAGTATAATCTACAAAGTATAATGTTTCTACAGAAATTAGAATACTAACTGAAAATTCTTCTGGTTAATGAGATTATTTTAAGTAATTTGCTTCTGATATTCTCACAGGGTGAGCCATTGAACTAGGATGAACCTAATTTGGGCAAGGGGAAGGGTTTTACATAAAAATCAGTTATATTACCCCATAGGCAGAATGAATAGCTGTTTTTTGAGATCTGCACTACACACTTGCTGATTATAATGTTTATGAGATCCAGCTGTCATTGTGGAAATCATAACGACTGGATTAAAGTCTAAGATATTTTAGTAGAGGCACCGTGGTGTAAATAGGGTGTCATCTTGACCAAACAGCTGGACATAGCTAGATATGATTTAAGACACTTGAGCACAGCGAAGCAAGCACAGGACAACAGTTTGAACACACAACAACGTggaaaatgaaactaagatttgatgtattttttaaactagcatTACAATATGCATTTGTGATCTCTTTTGATTTCACACCTTTAGTTGTTGTATTgtgcaccctataaaaggagcaGTTGCTGATGCCTGGATTAAATGTCAGTTTTTTTATGGAGCAAACCTCACCAGAACAAATCCAAAAGCAAGGTCTGCTTCATAAACTCATGTAAGCGTATCATGCTTGATTTAACTTGCgcagatgatggtgatggtgatgatgctgtCCTTTTATGAACTGCTCTGACGGATTCTCTCCATCAGAGAGTCTGGTAACCATCTGTTCTCCTTCTCCTACTGATGAGATAAGCCACGACtacgatgatgatgaggatgagcaGCACCACACCCACGCCAATGGCCACTCGGTAGTCTGGCTGGTTGGCCTTGCACATGTCAAGGGACCAAACTGGTTGCTGGTAAAGTTGAAGGCTTGCATCCTCTCCTTACTGAACTCCAGGTAGGCGCCATCACCCATGAAGACTGACTCTGATTTGCAGGAATAAGAGTGACTTGTTGCCATGCTGAACAGTTGCACCGATTGATTCGTCCtctccaaaattgacaaaactGAGGGAAAACAAGAACCTCAATTATCAATGTTTAAGTGCAGCCAAAATCATTAGAGTGCTCTAGATTTAATTCAGCATATCAGGTTGAAGCTTGTCTGtttctttttgtaattttcCACCCACGGAAATGAAACAAAGCTTTTTTGAAAGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80087 lncRNA upstream 23014 19888178 ~ 19888725 (+) True G67582
TU80083 lncRNA upstream 30000 19879978 ~ 19881739 (+) True G67579
XR_004577989.1 lncRNA upstream 87480 19821178 ~ 19824259 (+) True LOC117597044
TU79753 lncRNA upstream 88891 19811964 ~ 19822848 (+) True G67287
TU79755 lncRNA upstream 145317 19764260 ~ 19766422 (+) True G67289
TU80111 lncRNA downstream 2197 19916600 ~ 19917169 (+) True G67595
TU80167 lncRNA downstream 48196 19962599 ~ 19965888 (+) True G67642
TU80168 lncRNA downstream 48196 19962599 ~ 19965086 (+) False G67642
TU80206 lncRNA downstream 151627 20066030 ~ 20067165 (+) False dock11
TU80207 lncRNA downstream 151627 20066030 ~ 20067038 (+) False dock11
XM_026936965.2 mRNA upstream 25038 19881928 ~ 19886701 (+) True slx1b
XM_026935817.2 mRNA upstream 39590 19867151 ~ 19872149 (+) True LOC113539773
XM_034303403.1 mRNA upstream 217223 19651897 ~ 19694516 (+) True LOC113539894
XM_026936526.2 mRNA upstream 426593 19481055 ~ 19485146 (+) False LOC113540207
XM_026937193.2 mRNA downstream 29337 19943740 ~ 19953223 (+) True si:ch73-71d17.2
XM_026937262.2 mRNA downstream 56908 19971311 ~ 19983277 (+) True ntn4
XM_026937321.2 mRNA downstream 76281 19990684 ~ 20067220 (+) True dock11
XM_034303517.1 mRNA downstream 76281 19990684 ~ 20067220 (+) False dock11
XM_026937322.2 mRNA downstream 76281 19990684 ~ 20067220 (+) False dock11
trnah-gug_5 other upstream 82849 19828819 ~ 19828890 (+) True trnah-gug_5
trnah-gug_4 other upstream 83357 19828311 ~ 19828382 (+) True trnah-gug_4
TU79253 other upstream 1053087 18856456 ~ 18858652 (+) True G66864
TU78855 other upstream 1703175 18197312 ~ 18208564 (+) True G66492
XR_004577948.1 other upstream 1781234 18113444 ~ 18130505 (+) False frem1a
trnar-ucu_2 other downstream 186622 20101025 ~ 20101098 (+) True trnar-ucu_2
TU80337 other downstream 233392 20147795 ~ 20154771 (+) False fcer1g
trnaa-cgc other downstream 438011 20352414 ~ 20352485 (+) True trnaa-cgc
TU80896 other downstream 1105855 21020258 ~ 21033753 (+) True G68232
XR_003404073.2 other downstream 1412943 21327346 ~ 21327420 (+) True LOC113540699

Expression Profile