RNA id: XM_026936930.2


Basic Information

Item Value
RNA id XM_026936930.2
length 565
RNA type mRNA
GC content 0.42
exon number 4
gene id snrpf
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 19962582 ~ 19965851 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCTACGCTTCCGGTTCAAAGGTCACTCGTTGTCCTTCCCTTTCCTGGCGGCAAGGCATGCGAGTGCGCTTCTGAAACAGATGCTTTTTGAatgaagaattatttttttggtATTGAAACCTGATTTACCTTTCTAAACATGagTTTGCCGCTGAATCCGAAGCCCTTCCTGAACGGTCTGACAGGGAAACCAGTGATGGTGAAGCTGAAATGGGGGATGGAGTACAAGGGTTACTTGGTCTCTGTGGACGGATACATGAACATGCAGCTGGCTAACACAGAGGAGTATGTGGATGGAGCTTTGTCGGGTCACCTCGGGGAGGTGTTAATCAGGTGTAACAATGTTTTGTATATACGAGGAgtagaagaagaggaagaggatggagagatgagagaaTAATGCGGGGTTATGGATTTGGGGTTAAAATGTATGGTTTAGTTTGTCTTAGCTGtatgtttagttttgtttcttttctttttttgtgaattcatGTGTTGGTTTTTTACACTATAAAAGCATAATTTCTGGCTGCACAATGGTGCAaataaaattatgcattttgta

Function

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0019013 viral nucleocapsid cellular_component
GO:0005634 nucleus cellular_component

KEGG:

id description
K11098 SNRPF, SMF; small nuclear ribonucleoprotein F

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80085 lncRNA downstream 81016 19880163 ~ 19881566 (-) False zgc:112271
TU80065 lncRNA downstream 131832 19830550 ~ 19830750 (-) True G67562
TU80038 lncRNA downstream 137663 19769357 ~ 19824919 (-) True G67535
TU80059 lncRNA downstream 174034 19787961 ~ 19788548 (-) True G67556
TU80030 lncRNA downstream 332633 19616448 ~ 19629949 (-) True G67528
TU80274 lncRNA upstream 100212 20066063 ~ 20067059 (-) True G67719
TU80315 lncRNA upstream 161775 20127626 ~ 20132037 (-) True G67757
TU80460 lncRNA upstream 331471 20297322 ~ 20327561 (-) True G67891
TU80702 lncRNA upstream 593527 20559378 ~ 20566758 (-) True G68075
TU80707 lncRNA upstream 604548 20570399 ~ 20570930 (-) True G68080
XM_026937194.2 mRNA downstream 4635 19953165 ~ 19957947 (-) True amdhd1
XM_034303932.1 mRNA downstream 19215 19934011 ~ 19943367 (-) False LOC113539792
XM_034303934.1 mRNA downstream 29424 19919480 ~ 19933158 (-) False LOC113539792
XM_034303935.1 mRNA downstream 29424 19919480 ~ 19933158 (-) False LOC113539792
XM_034303933.1 mRNA downstream 29424 19919480 ~ 19933158 (-) False LOC113539792
XM_026937203.2 mRNA upstream 166908 20132759 ~ 20143530 (-) True ndufs2
XM_026936477.2 mRNA upstream 199860 20165711 ~ 20223868 (-) True focad
XM_034303463.1 mRNA upstream 448074 20413925 ~ 20419029 (-) True LOC117597004
XM_026937087.2 mRNA upstream 459740 20425591 ~ 20444949 (-) True map4k2
XM_026937199.2 mRNA upstream 481405 20447256 ~ 20454617 (-) True men1
XR_004578055.1 other downstream 18748 19931590 ~ 19943834 (-) True LOC113539792
XR_004578057.1 other downstream 19215 19931590 ~ 19943367 (-) False LOC113539792
XR_004578056.1 other downstream 19215 19931590 ~ 19943367 (-) False LOC113539792
XR_004578054.1 other downstream 19215 19931590 ~ 19943367 (-) False LOC113539792
TU80099 other downstream 73856 19888179 ~ 19888726 (-) True G67587
XR_003404107.1 other upstream 177933 20143784 ~ 20143889 (-) True LOC113540737
TU81225 other upstream 1360195 21326046 ~ 21329250 (-) False G68462
XR_004578106.1 other upstream 1402399 21368250 ~ 21371010 (-) False LOC113539989
XR_004578104.1 other upstream 1402399 21368250 ~ 21371010 (-) True LOC113539989
XR_004578105.1 other upstream 1402399 21368250 ~ 21371004 (-) False LOC113539989

Expression Profile