RNA id: XM_034303517.1


Basic Information

Item Value
RNA id XM_034303517.1
length 7854
RNA type mRNA
GC content 0.45
exon number 54
gene id dock11
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 19990684 ~ 20067220 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCTGAGCAGCTTTGCGTATCTGACCGCgctacatctgtgtgtgtgtctctgtcgcACCTGGATTTAAGGTAATGTCTCGGATTTCACAGGGAAAGTTGATGGAACTGTTAAGCGTATAAAGTCAAAAGCATGTCCGAAGTGCGGAAATTCACCAAGCGGCTGAGTAAACCCGGGACAGCGGCGGAACTCAGGCAAAGCGTGTCGGAGGCTGTCAGGACGTCTGTTGCTGTGGAACAAGCAAAGATCATCGAACCACTAGACTATGAAAATGTTGTGTTCCAAAGGAAAGCGCAGATCCACAGTGATCCTCAGAGAGACCTGCTTCTGTGGCCAGCTGATGACGTCTCAGAGTTACGAATCGAACGTCAGAGAAGAACGACTATTTCCTCTGTACCTCAGAATGCTGAACAAGAAGCTAAAAGTCTATTTGCAACAGAGTGCATCAAAATGTACAACACTGAGTGGCACATGATCAGTTACAATTATGAGGCTTACTCAGGATGTTTCCGCACTCTTCCCAGTAAAGGGACCAAGACTGAGAAACTCCCATACCACGTGTTTGAGACCGATGAGGGAGAGGAGgaCTCCTCATCACTGTGCTCTCAGAAAGGAGGTGTGATGAAACAGGGATGGCTCTATAAAGCCAATATCAGCAGCCTTTCTGTATCGATGAAGGCATTCAAGCGGCGGTATTTCTACCTGTCTCAGCTCCCTGATGGTTCCTACATTCTCAACTCTTACAAAGATGAGAAGAACTGTAAAGAGACCAAGGGCTCCATTTACTTGGACTCTTGTATCGACGTGGTGACGTGTCCTAAGATGCGTCGGAATGGCTTTGAACTGAAGATGCAAGAGCGCTACAGTCACTATTTGGCAGCAGACAGTGAAGCTGAGATGGAGGACTGGGTGAACACACTGAAGCTCGCGCTTCAGAGTTCATCAGAAGACAGGAGAAACGGAACCGACTCCTCAGACTGTTCATTAGATGAAGAAACCAGTAGCCAAGGGAAAACAGAGAGCATTACCGAGGGCTTTGGACGGAGTCTTCATCCAGAGCTTATGAAGTATGCCAGAGAAACAGACCAGCTCAGTAAAATCAACAGGAATGAAAGTAGGCAGAAGATCCTTACCCTAGATCCAGAGACTCAGAGACTGGATTTCTCAGGCATCGAGCCAGATGTGAAGCCATTTGAAGAGCGCTTTGGTCGCCGTATTATGGTCAGCTGCCATGACCTGACTTTCGCCTTGCAGGGTTCTATCAGTGAGAAAAGCGATGGAGCGCTGACCAATCCGGAGCCGTTCTTCATCAGTTTAGCCTTATTTGATGTAGCCAAAGGCTGCAAGATCTCAGAAGATTTCCATGTGGATCTGAACCCAccatgtgtgagagagatgctGTCTGAGGCCCCTCACACACCCGCTGAGACAGAAGGAAGAGAAGTGGCAGATGCAGTCAGAGTCAATGGCTTACCTGTTATTCAGAGAGTGTCAGAGACTCTTCTACACTTTCCAACTCAGGGCATCTTGTCTGTGACCAACCCCCACGCAGATGTCTTCCTGGTGGCTCGGGTGGAGAAGGTCCTGCAGAATGGGATCACTCACTGTGCTGAACCCTACATTAAGACTTCTGATATGTGCAAGACGGTTCAGAAAGTGCTGAAGACAGCTAAGCAGACGTGCCAGCGGCTTGGGCAATACAGGATGCCCTTTGCCTGGGCTGCCAAGCAGGTATTTAAAGATGCCCAGGGTAGTTTGGACATGGAAGGAAAGTTCTCACCCCTGTATCGCCAGGACAGCAGTAAGATCTCTACAGAAGACCTTATCAAACTACTGATCGACATCAGGaaacCAGAAAAAAGTAAGCTGCAAATCATCCCAGGACAATTGAATGTCACCATTGAATGTGTGTCTCCGGACTTGCCAAATTCAGTGACCTCTTCCTACATCCCAGTGAAGCCATTCGATGAGcagtgtgagaaagtgtgtgtggaacTAGACGAGTTTGTCTCTGAAGAAGCCAAGTACAATCACCCTTTCACCATCTATAAGAATCACCTCTATATCTATCCCCAGCAGCTCAAATATGAAAGCCAAAAGACCTTTGCCAAGGCGAGGAACATTGCAGTGTCCATTCAGTTCAAAGATTCAGATGAAGAGGGGGCAGGCCCACTTAAGTGTATCTACGGCAAGCCAGGGGAGCCATTGTTCACCACTAGTGCATTTGCTGCTGTGCTGCATCACAACCAAAGCCCTGACTTTTACAACGAGATTAAAATTGAGCTGCCAATCCATGTTCATGAGAAGCATCACATTCTCTTCACCTTCTACCACATCAGCTGTGAGCTCAGTAACAAAGCCAGCTCcaagaagagagagggagtagAGACACTGGTGGGATATGCCTGGGCACCACTGCTAAAGGATGGGAGGATACAGTCTTCAGAGCTGCAGCTTCCTGTATCTGCTAATTTACCTGCTGGTTACCTTTGTGATAAGAGCCAAGACTCCAAGAAGTCACCAGACATCAAATGGGTGGAGAATGCTAAGCCGCTGTTTAAAGTGAAGACCTATGCAGCATCAACAATTTACACTCAGGATTTGCATCTCCATAATTTCTTCCAGTATTGTCAGCTGCGGAAGTCTGCGTCAGAGGGGAACCTGACAGAGCTCATCAAATACTTAAAGTGCCTGCACGCTGTGGAGACTCAGGTCATCATTAAATTCTTGCCCACCGTGCTAGTGCAGCTCTTCCAGGTCCTCATTACGACAAGCAAAGAGCCTCAGGAGATTGCCGTCAACGCCACACGTGTGATCATTCACATTGTGTCCCAGTGTCATGAAGAAGGGCTGGAGCACTACCTGCGCTCTTTCATTAAGTATGTATTTCTCACAAACAGCGCAGCATCAGGAAACTCAGTGACCACGCATGAAGTTTTAGCCACAACAGTGACCGCAATTCTCAAGCAGACTGCAGACTTCAACACCTGCAACAAGCTACtgaagTACTCATGGTTCTTCTTTGaagcaatggccaagtcaatggCACATTACCTTTTAGAAGGCAACAGAATGAAGatGCCTAGAGCTCAGAGGTTCCCAGATTCGTTCCAGCAGGTGCTGCAATCTCTGCTGCTCTCCATCATGCCTCACATCACCATACGCTATGTAGAGATCCCTGAAGAGGCTCGCTGCGTCAACATCAGCCTGGCCAACTTCATTAAGCGCTGCCTGACCTTCATGAACAGAGGATTTGCATTTAGTCTTGTGAATGACTACATGTGTGGATTCAGCCAGAAAGATCCCAAGGTATTGACAGAAATGAAGTTCTACTTCCTCATGGCAGTGTGCAATCATGAGCACTACATTCCACTGAACCTGCCCATGGCATTTGGCCGTACCAAGTTACAGAGAGTCCAGGattttatttcatacgCGGCGGAGTGTTTTGGCGTCATAGACCAGAGTCTGGAGTACAGCCTTACTGAGGACTACTGCAGGAACCATTTCCTGGTGGGTCTGCTACTGCGAGAGGTAGCCGAGGGCTTGCAGGGAAATCCAGAGATCAGGCAACTGGCTGTAGCTGTTCTGAAGAACTTGATCATTAAACATGCCATGGATGACAGATACACAGCTTATAAGAATCACCAGGCCCGTATTTGTGTGCTCTACCTGCCACTCTTCGAGCTACTCTACCAAAACCTGAATCAGCTGAATGCCAAAAGGCAACCTTCAAGATCTGGCTTTGGCATCATGTGCAGAGATGATGTGTCCATGACTAGCTTAGACCCTCGGCGTGCCAGTACAGCCACTGAAAAGGAACCAGCTGGGCTGGTCACAATGAATGGACATTTAAGGAAAGAAGACTCGCGAAGCTCAATGTACGGAGACCCTGGAACACCAGATATTAACGAGttaCAGAGACGTGAGTCCACAATGAGCACCCTTCCGTCCATAGGGCGCCTTGGACGTTACGAGGTCAGAGGACTGCTGCTGTGTTTCCTGCACATTGTAAAGACTGTATCAGAGGATACCCTGCTGACCTACTGGAACAAAGTGAATCCACAGGACATCATGAACTTCCTCAGTCTCCTAGAGATTTCTCTGGTTCAATTTCGTTATGCTGGTAAAAGGAACATAAATAGGTGTCAGGAATCTTGGGTGTCAAGGGCCTTCTCCTCAGACAGGAAGTCTCAGACGATGCCTGTGATGCGTGGACGCTCCAGCCTCATGCAGGCCAGCCTGCAGCAGTTTAACACGCTGGAGGCCTCTCATACACTCAACACAGAAGCAGAAATGAACCATCAGGCCCTGTTAGAGGGTAACATCTCTACAGAGGCTTGCCTTATTGTGCtggacacactctctctcttcactcagAGCTTTAAGAACCAGCTTCTAGAGAATGATGGCCACAACACTCTGATGAAGAAGGTATTCGATATTTATCTAACCTTCCTAAGAGTTGGACAATCAGAAGTGGCAATCAGACACGTCTTTGCATCTCTAAGAGCCTTTATGTCCAAGTTTCAGGTGACTCTCTTTAAGGGCCGTGTGACCTTGTGTGGCTCATTGTGTTACGAGGTACTAAAGTGCTGCATGTCCAAACTGGGGAATATACGTGGGGAAGCAGCAGGCCTGCTGTACCTCCTCATGAAAAACAACTTTGAGTACACCAAGAGGAAGAGCTTTTTGCGCATGCACTTACAGATCATCATTGCTGTGAGTCAGCTAATTGCAGATGTGGCCCTGACAGGAAGTTCACGCTTCCAGGAGTCATTATCCATCATCAACAACTTTGCCAACAGTGACAAGGCCATGAAGtctTCATCATTTCCAACAGAAGTGAAGGGCCTCACAATGCGCATCCGTACGGTGCTGATGGCCACAGCTCAAATGCGTGAGCATGAGAAGGACCCAGAAATGCTGCTGGATCTGCAGTACAGTCTGGCCCGCTCCTACGCCAGCACACCTGAACTCAGACGCACCTGGTTGGACAGCATGGCACGAGCTCACCTCAAAAACGGAGACACCTCAgagGCAGCTATGTGCTATGTCCACATTGCAGCTTTAGTGGCAGAGTATTTGTTCAGGAAAAAACTGTTCCCAAGTGGACTGGCAGCTTTTAAGAAGATCACTTTTAACATAGAGGAGGAGGCTGCCATGAAAGAAGACTCAGGCATGCAAGATGTCTACTACAGTGAGgatgTTCTGGTAGAGCAGCTGGAGGTATGTGTGGAAGGCCTCTGGAAAGCTGAACGGTTTGAGCTTATCACATACATTGCCCGGCTCATTATTCCAGTCTATGAAAAGCGCCATGAGTTTGAGAAGCTGAGACGTTTGTATGACACCCTGCAGAGAGCATATTCTAAGATCTTAGAGGTTATGCAGACGGGTCGCCGCCTGCTGGGTACCTACTTCAGAGTGGCCTTCTATGGGCAGGGCTTTTTTGAAGAGGAAGATGGAAAAGAATACATCTACAAAGAGCCAAAGCTCACAGGCCTGTCAGAAATTTCTCATCGGTTGCTCAGCCTATATGGGGACAAATTTGGAGCAGAGAATGTCAAGATCATCCAGGACTCCAATAAGGTAAATCAGAAAGACCTGGACCCAAAGTTTGCTTATATACAGGTCACATTTGTCAAGCCTTACTTTGATGAGAGAGAGCTGGCTGAGAGAACAACAGACTTTGAGAAGTGTCACAACATCAACCGCTTTGTTTTCGAAACGCCTTACACACTTACAGGGAAGAAACACGGAGGAGTTGAAGAGCAGTGCAAAAGACGAACAGTTCTTACGACGTCAAACACTTTCCCCTATGTGAAGAAGAGGATAGAGGTGGTTGGGGAGAAGCACTTGGAGCTGAAGCCCATTGATGTAGCCATAGATGAGATGCGGGATCGCAGCACTGAGCTCAACAAACTATGCTCCAACCAGGAAGTGGACATGATTCAGCTGCAGCTCAAACTCCAGGGCTGCGTCAGTGTGCAGGTCAATGCTGGTCCTATGGCATATGCTAGAGCCTTCCTCGATGATTCCAAGTCTGGCCAGTCCAATAAGAAAGTCAAGGAGCTCAAAGATATATTCAGGAGCTTTGTTCAGGCATGCAGTATGGCTTTAGATATTAATGAGCGGCTCATTAAAGAGGACCAGTACGAATATCACGAGGGACTGAAGGGCAACTTTAAAAGCATGGTCAAGGAGCTGTCTGATATTATTCATGAACAGATCTTTGAGGAGGATGAGATGCGTTCCCTCTTGCAGAACTCACTCCATGTTTTCCGTGCCATCAGTGGAACGTCCACTGGCTTCAGCTAGAATCTGATGAAGATCCCTTAAATTTAAGACTAATCAAATCTCTGCACACCTAAACTTTCAGCGTCCTGCTCCACGCTCTTCTGGATTAAAACATTGCTTAAATGTCAGCCTCTAAGAAAGTGCCATGTTAGTACAAGTGCTTAAAGCTCTTTCATTTTGCACCAGCTGTCCATCATGTTTTCCCCAAAATAAATAGATATTCAGCAACATCACATGTAGCAGCAGCCAAAATCTGACAGTCCCagtgtatttcatatttcatatataactACTGAAAATGgtcagtagttttttttttttttttttttttttgtgagctatagtattattattattactattattattatttttattaaacacagtGGATAGATGAATTTAGACAGGCGAAGGGGAAGAAATTTTAAACTATATTGAAGAACGTAATAAAACACCTTCATTTTAATAAGCTACATTTGTGGCCTTGATGTTCCTTTTAACGCATCACtccttttaaaaatatgtattattattattatgatgcaTTAATAAGTCAATAATGCCTGGTGCCTGTTAGCTCAGAATCTCTACCATCTTGACAATCCTTATTGAGGTTTTGAGATTTAACACCTTCAAGTCCTCACTATCTTTCTGATATTTTCCTCTTTGCATTGAAGTCTTAATTATTAGAGCACCACTGTCGCTGTGTTTACTGACAGTGGTGACAAACAACACAGTAAATGTACTATGAACACCTGCTTTattcagagtgtgttattccaaAGCTTGTGTTGGAGCAATGAACAGTTTCTAATTTTCTGAGTTTTAAATATAAGTGCTTACATGTGAGCAAATGGACCTGCACGGATGATTACATGCTAATAATTTGACTACTGTGTCTGAATTCTCAAACTCACAGCCAGGAGAAGCATTAATATGGATAGTTTCAAGATATTCAATTCgactcaattttatttgtataacacgtttaacaatggacattgtcacaaagcagctttacagaaatcaggattttaatttaaatttaaattaagatttctttttcatgtttaacaaaatgtatggtccaagaaaaaaaatcttggatGCATTGCCTGTTGGTAATCAGTACAAGTCATGTTAAATTGGCAATCAAATAGGCTGATTGTTTCCACTGATTTTATCATTGTGGGAAATAATTCTTGAGATGAGTCCACAGCAGCGTGACGCCTTTGCCAGTGCTACACTGTGTAGCAGTTTGCATTGAGCAGGATTTACTAGTCTATTCAGGAACAACATCCTCTCATAGACTGGATTATTTATCTaagtgctgctgttatataacTCATGGGACTGTATCTGAACGTGACTCCTGTTCAATGAGAACAAAATAACAGCTGcaaacagttgttttgttttgttttggttttttttactcaattttgttgtggtttttggTATTtgcagaagaataaaaaaagtactttaaatgaataattattgtCTATGTGTTATTTGCtatcaaaagaataaaatgtgttttaagaaACAATGGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80167 lncRNA upstream 24796 19962599 ~ 19965888 (+) True G67642
TU80168 lncRNA upstream 25598 19962599 ~ 19965086 (+) False G67642
TU80111 lncRNA upstream 73515 19916600 ~ 19917169 (+) True G67595
TU80110 lncRNA upstream 76281 19911739 ~ 19914403 (+) True G67594
TU80087 lncRNA upstream 101959 19888178 ~ 19888725 (+) True G67582
TU80393 lncRNA downstream 182838 20250058 ~ 20275675 (+) True G67827
TU80554 lncRNA downstream 413380 20480600 ~ 20481755 (+) True G67958
TU80678 lncRNA downstream 568128 20635348 ~ 20635565 (+) True G68054
TU80695 lncRNA downstream 625043 20692263 ~ 20693053 (+) False G68070
TU80696 lncRNA downstream 625043 20692263 ~ 20693111 (+) True G68070
XM_026937262.2 mRNA upstream 7407 19971311 ~ 19983277 (+) True ntn4
XM_026937193.2 mRNA upstream 37461 19943740 ~ 19953223 (+) True si:ch73-71d17.2
XM_026936965.2 mRNA upstream 103983 19881928 ~ 19886701 (+) True slx1b
XM_026935817.2 mRNA upstream 118535 19867151 ~ 19872149 (+) True LOC113539773
XM_034303403.1 mRNA upstream 296168 19651897 ~ 19694516 (+) True LOC113539894
XM_026936959.2 mRNA downstream 1841 20069061 ~ 20075035 (+) True LOC113540455
XM_026936960.2 mRNA downstream 14550 20081770 ~ 20087305 (+) True LOC113540456
XM_026935895.2 mRNA downstream 24667 20091887 ~ 20099077 (+) True LOC113539830
XM_026937098.2 mRNA downstream 35261 20102481 ~ 20129464 (+) True kirrel1a
XM_026937099.2 mRNA downstream 35262 20102482 ~ 20129464 (+) False kirrel1a
trnah-gug_5 other upstream 161794 19828819 ~ 19828890 (+) True trnah-gug_5
trnah-gug_4 other upstream 162302 19828311 ~ 19828382 (+) True trnah-gug_4
TU79253 other upstream 1132032 18856456 ~ 18858652 (+) True G66864
TU78855 other upstream 1782120 18197312 ~ 18208564 (+) True G66492
XR_004577948.1 other upstream 1860179 18113444 ~ 18130505 (+) False frem1a
trnar-ucu_2 other downstream 33805 20101025 ~ 20101098 (+) True trnar-ucu_2
TU80337 other downstream 80575 20147795 ~ 20154771 (+) False fcer1g
trnaa-cgc other downstream 285194 20352414 ~ 20352485 (+) True trnaa-cgc
TU80896 other downstream 953038 21020258 ~ 21033753 (+) True G68232
XR_003404073.2 other downstream 1260126 21327346 ~ 21327420 (+) True LOC113540699

Expression Profile