RNA id: TU80337


Basic Information

Item Value
RNA id TU80337
length 1369
RNA type TUCP
GC content 0.37
exon number 6
gene id fcer1g
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20147795 ~ 20154777 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACGGACACGCACAAACCACAACTTCCCCTCTCATGCCTCTCACTCTCTGCTGAAGTCAGTTTCCTGAAAGCTAGCTGTCCATCGCTGCAGTGTGGTTCTTTTTCTCTGTAAGGCCTAAGTTTCAGTTATGAAGAAGCCTGGGTTCAACCTGCTTTGTCTCCTTCCCCTTTCGATGACCATTGGCCAAGCTGCCGCTGTGGATGAAGCGGAAATCTGCTATGTCTTGGACGCCATTCTGTTCGTCTACGGACTTGTCCTAACTATCCTTTACTGCCGACTGAAGataATGCATGAACTTGCAAAAAAACAGTCTTCTGcaaagACGGGAGCATCAGAGGGAGTCTATGAAGGACTTTCACATCGTACTCAAGATACGTATGAGTCCATCAACTTGAAGAAGACCAAAGCATAAGACGGACATAGTGAACAAAAATAATCCGAATGCTTTATTTTCCTCTtcttaacattatttaattgtCTTATTCCTGTTGACTAATGTAGACCGATGTAAAATCTAAGCAACTTTCTTTTAATGGAATTGCACTGTAATGCTAGAAACAGATGTATATCTAATTTTACTAGCTTAATAATTATTGAAAATTCTTTAATGtctgcatatttttgaaaagtaTATATGTATTTGAAGAAAAGTAAACAACTTTATGAGGAAAGTAATGTTAGAAAGTAGCATCATAGAAAGTAATATTCAAGGCCATTGGGATTTTTgagaaattaacatttttgttctatgaacaaaatgtcatttatgcTGAAtaactgtacatttatataCTTAATGTCTCACTTCTCTCCCTTTTATATTCCATGTATACATACTTTTCAAAGTTTGTGGGCTAGCTTTGCGTAATTCCTAAATTGCTAAAACATTTGTCTACTTGTGCTGTTTCTCTTCTGCAAAGTTGTTTCATATGTCTCTGGCTGCTATAGCAACAGCAGTTCCTCCAACCACAGTGTTCGATTAACTTCCTGTTTTCTGATCGTGTTGGTTGTCTGACAGAAGTGGAGTATCAAAACTTAGAACAGAACTACAGCGCTGGTTATATAAGTAAATACTGATTTCTGTACTCTTGAGATAGAGATCATGGTAATGCAGTTTTGACATCAAGCACCAGAGAGCAGCATTTATGCACATTTGTCACTGCCTCAAGTTTCTCAAGTTTCTGACCTATGCTTGCGTGTCTCTGGGTTCtctgttatttataattttgtattcTATCTATAATTCTCTGGATTGCCCTTTTGGGctgttttttgtaattttttaaaaatcatttctttcAGTAAAACATCTACATATGCATCCAGGTTGCTGAGCCTGTTTGTTATAAGCCATTAATAAACATACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80206 lncRNA upstream 80630 20066030 ~ 20067165 (+) False dock11
TU80207 lncRNA upstream 80757 20066030 ~ 20067038 (+) False dock11
TU80167 lncRNA upstream 181907 19962599 ~ 19965888 (+) True G67642
TU80168 lncRNA upstream 182709 19962599 ~ 19965086 (+) False G67642
TU80111 lncRNA upstream 230626 19916600 ~ 19917169 (+) True G67595
TU80393 lncRNA downstream 95287 20250058 ~ 20275675 (+) True G67827
TU80554 lncRNA downstream 325829 20480600 ~ 20481755 (+) True G67958
TU80678 lncRNA downstream 480577 20635348 ~ 20635565 (+) True G68054
TU80695 lncRNA downstream 537492 20692263 ~ 20693053 (+) False G68070
TU80696 lncRNA downstream 537492 20692263 ~ 20693111 (+) True G68070
XM_026937098.2 mRNA upstream 18331 20102481 ~ 20129464 (+) True kirrel1a
XM_026937099.2 mRNA upstream 18331 20102482 ~ 20129464 (+) False kirrel1a
XM_026935895.2 mRNA upstream 48718 20091887 ~ 20099077 (+) True LOC113539830
XM_026936960.2 mRNA upstream 60490 20081770 ~ 20087305 (+) True LOC113540456
XM_026936959.2 mRNA upstream 72760 20069061 ~ 20075035 (+) True LOC113540455
XM_034303348.1 mRNA downstream 4541 20159312 ~ 20166249 (+) False hacd4
XM_026936479.2 mRNA downstream 4549 20159320 ~ 20166249 (+) True hacd4
XM_026936481.2 mRNA downstream 4842 20159613 ~ 20166249 (+) False hacd4
XM_034303347.1 mRNA downstream 4972 20159743 ~ 20166249 (+) False hacd4
XM_034303346.1 mRNA downstream 67117 20221888 ~ 20271231 (+) True mllt3
trnar-ucu_2 other upstream 46697 20101025 ~ 20101098 (+) True trnar-ucu_2
trnah-gug_5 other upstream 318905 19828819 ~ 19828890 (+) True trnah-gug_5
trnah-gug_4 other upstream 319413 19828311 ~ 19828382 (+) True trnah-gug_4
TU79253 other upstream 1289143 18856456 ~ 18858652 (+) True G66864
TU78855 other upstream 1939231 18197312 ~ 18208564 (+) True G66492
trnaa-cgc other downstream 197643 20352414 ~ 20352485 (+) True trnaa-cgc
TU80896 other downstream 865487 21020258 ~ 21033753 (+) True G68232
XR_003404073.2 other downstream 1172575 21327346 ~ 21327420 (+) True LOC113540699
XR_004577949.1 other downstream 1474305 21629076 ~ 21639890 (+) True mettl4
XR_004577950.1 other downstream 1474305 21629076 ~ 21639890 (+) False mettl4

Expression Profile