RNA id: TU80678


Basic Information

Item Value
RNA id TU80678
length 218
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G68054
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20635348 ~ 20635565 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tggccctTGAGTGTGTACATATAAAAAGCCTTGCAGGTGTAAATGCAATTCTGAGGCATGGCCTGGTCTCTGTATTTAGTTCCTGTTTCTCTAGTTTCTTGGTTGCATAATTACTTGTTTTTGCCTAGCTCACTACTTTTTAgttcattgttttcttttttttttttttaaaaagaaatcctgACATCCCTGAGTAAAGAACATTGCTTattcaaaag

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis
ko00030 Pentose phosphate pathway
ko00051 Fructose and mannose metabolism
ko00710 Carbon fixation in photosynthetic organisms
ko00680 Methane metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80554 lncRNA upstream 153593 20480600 ~ 20481755 (+) True G67958
TU80393 lncRNA upstream 359673 20250058 ~ 20275675 (+) True G67827
TU80206 lncRNA upstream 568183 20066030 ~ 20067165 (+) False dock11
TU80207 lncRNA upstream 568310 20066030 ~ 20067038 (+) False dock11
TU80167 lncRNA upstream 669460 19962599 ~ 19965888 (+) True G67642
TU80695 lncRNA downstream 56698 20692263 ~ 20693053 (+) False G68070
TU80696 lncRNA downstream 56698 20692263 ~ 20693111 (+) True G68070
TU80850 lncRNA downstream 229313 20864878 ~ 20895955 (+) True G68192
TU80969 lncRNA downstream 552966 21188531 ~ 21189134 (+) True G68299
TU80981 lncRNA downstream 570180 21205745 ~ 21209324 (+) True G68304
XM_034304144.1 mRNA upstream 4362 20587613 ~ 20630986 (+) False ehbp1l1a
XM_026935945.2 mRNA upstream 4362 20587614 ~ 20630986 (+) False ehbp1l1a
XM_034304143.1 mRNA upstream 15725 20587612 ~ 20619623 (+) True ehbp1l1a
XM_034304045.1 mRNA upstream 53336 20579774 ~ 20582012 (+) True LOC113539982
XM_026937126.2 mRNA upstream 57867 20570371 ~ 20577481 (+) True taf6l
XM_026935854.2 mRNA downstream 1663 20637228 ~ 20649186 (+) True si:ch73-40a2.1
XM_026936344.2 mRNA downstream 17010 20652575 ~ 20660555 (+) True rab1ba
XM_026937147.2 mRNA downstream 47143 20682708 ~ 20692222 (+) True rce1a
XM_026937148.2 mRNA downstream 47143 20682708 ~ 20687765 (+) False rce1a
XM_026937256.2 mRNA downstream 100262 20735827 ~ 20739174 (+) True cd248a
trnaa-cgc other upstream 282863 20352414 ~ 20352485 (+) True trnaa-cgc
TU80337 other upstream 480577 20147795 ~ 20154771 (+) False fcer1g
trnar-ucu_2 other upstream 534250 20101025 ~ 20101098 (+) True trnar-ucu_2
trnah-gug_5 other upstream 806458 19828819 ~ 19828890 (+) True trnah-gug_5
trnah-gug_4 other upstream 806966 19828311 ~ 19828382 (+) True trnah-gug_4
TU80896 other downstream 384693 21020258 ~ 21033753 (+) True G68232
XR_003404073.2 other downstream 691781 21327346 ~ 21327420 (+) True LOC113540699
XR_004577949.1 other downstream 993511 21629076 ~ 21639890 (+) True mettl4
XR_004577950.1 other downstream 993511 21629076 ~ 21639890 (+) False mettl4
XR_004578015.1 other downstream 1116851 21752416 ~ 21762301 (+) False LOC113540377

Expression Profile