RNA id: TU80745


Basic Information

Item Value
RNA id TU80745
length 262
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G68107
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20635532 ~ 20635793 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaatgacaatttctttccatttattttaaatatacatctTTTTGatggaaacatttaaaaaaggaagtACAAGAAGCTTTTTCAGCAGTGTCAAAAATATGATACGGAAATATGATTTGTTGTCCgtaatgtgtatgtgcgtgGTGTTATTTTAATCCattctcttgaagggtgccaataattctgcaatTAACTGTGTATTGGTAAcaggtttttcttctttttcttcttttgaatAAGCAATGTTCTTTACTCAGGGATG

Function

GO:

id name namespace
GO:0008144 drug binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0036094 small molecule binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80738 lncRNA downstream 3822 20630166 ~ 20631710 (-) True G68106
TU80707 lncRNA downstream 64602 20570399 ~ 20570930 (-) True G68080
TU80702 lncRNA downstream 68774 20559378 ~ 20566758 (-) True G68075
TU80460 lncRNA downstream 307971 20297322 ~ 20327561 (-) True G67891
TU80315 lncRNA downstream 503495 20127626 ~ 20132037 (-) True G67757
TU80746 lncRNA upstream 111 20635904 ~ 20636199 (-) True G68108
TU80832 lncRNA upstream 142760 20778553 ~ 20816280 (-) False znf16l
TU80840 lncRNA upstream 167624 20803417 ~ 20804104 (-) True G68186
TU81181 lncRNA upstream 668971 21304764 ~ 21313873 (-) False chchd7
TU81229 lncRNA upstream 685025 21320818 ~ 21321146 (-) True G68466
XM_026937254.2 mRNA downstream 131124 20497680 ~ 20504408 (-) True ecsit
XM_026936378.2 mRNA downstream 149874 20479260 ~ 20485658 (-) True si:dkey-106g10.7
XM_026937198.2 mRNA downstream 180070 20447657 ~ 20455462 (-) False men1
XM_034304099.1 mRNA downstream 180070 20447657 ~ 20455462 (-) False men1
XM_026937199.2 mRNA downstream 180915 20447256 ~ 20454617 (-) True men1
XM_026935869.2 mRNA upstream 25933 20661726 ~ 20677144 (-) True peli3
XM_034303290.1 mRNA upstream 25933 20661726 ~ 20675403 (-) False peli3
XM_026936122.2 mRNA upstream 120083 20755876 ~ 20768426 (-) True sstr1b
XM_026935805.2 mRNA upstream 142745 20778538 ~ 20825520 (-) True znf16l
XM_026935868.2 mRNA upstream 199968 20835761 ~ 20838098 (-) True LOC113539812
XR_003404107.1 other downstream 491643 20143784 ~ 20143889 (-) True LOC113540737
TU80179 other downstream 669694 19962616 ~ 19965838 (-) False snrpf
XR_004578057.1 other downstream 692165 19931590 ~ 19943367 (-) False LOC113539792
TU81225 other upstream 690253 21326046 ~ 21329250 (-) False G68462
XR_004578106.1 other upstream 732457 21368250 ~ 21371010 (-) False LOC113539989
XR_004578104.1 other upstream 732457 21368250 ~ 21371010 (-) True LOC113539989
XR_004578105.1 other upstream 732457 21368250 ~ 21371004 (-) False LOC113539989
trnaa-ugc other upstream 782375 21418168 ~ 21418239 (-) True trnaa-ugc

Expression Profile