RNA id: TU80981


Basic Information

Item Value
RNA id TU80981
length 2589
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G68304
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 21205745 ~ 21209324 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTAAGttgttaaaatacattttaatagaGAACAGTATTCACATTTAACAGGGACAGcaatcagatttatttatttctgaccaAAAACAATTTCATAATTACCTTCTATAATATACccttgtaataaatatttatgtataaaccCTACAACTGTTAacctaaacattgttttaagttggcagtttaatattttacattaaaaaataaaagataagtGTTTTGAACTAAAGGTTTATGTATTTTCCACCCTAGATGATTTCAATGAGGCTAATTAATATTGTCTATTGACTTTGTTTAACTGATTTTGAAAACCAGTTGTGTGAAATTATGTTGACCATGTACAGAACAATAATGCTAATTCTAGCCTCCTTACTGGACataaagattatataaaatgcataatagAAAACATGTAAGCCTTTAAAAacgtggggggaaaaaaacagagcatcAGAATGAGAACCAAAATAGtattaaaaatccattttataAACTGGTTCACTTCTGGCAGATTTAAATAATAgacaaaaaaagttatttatcaGTAAGCAATGAAGCACTTTCTGACTGTAAAATCTAAATAGGCATAAAtcaagaaaacaacttttaaaaGCTAATATCTATACCCAGCACTCAATCAAGAACAttaaattatacttttttatataacaCAAATATACGTTATACATATACCTTTTATTCAGGTATCACAAATATGCACCAAACTCCACAAAACTCCACTACTCAAATGTTCCTGTACTTTGGGCCAACCAAAGCAGAGTACGAGAATGTCAACTTCCAAGACCTGAACAAAAAATGTGCTCTACACTGCATTAGGTCTAAATGTGCAGTGTACTCACTCTAAAACAAACTTAGGAATTAGACCATTCTAGACTTAGTTGACCTCATCGTATTAGATATTTCTCATGTCCCATTTGTTTTAATTGGGTTTTATCAAACCTTACATGATTATACATTCATTCAACtggtcatttttttgtttttccagattGAAGATTTCAGGAGACCTTTGCTAGATACTTTTTCCTCCTTCTTGTGATGCTTAGTTTCTCCAGACACTTCCTTTTTTGGTTCTGATTGTTTAGTCttcttctcactttctctttttgcCCTTTCTTTGCCCTGGCCAGGAACACCTTTCTCAACGTGTTGCTCTgctgctctttctttctctgcttgTTCTTTAATTAGCCTGtccttttctgctttctctcttgctagcttttccttttctgctttttcttttgctatctttccttctctgccttttctttagctagcttttctttttctttctctgcctgCTCTCTAGCCAGCTTTTCAGCCTTttccttttctgctttctctttcgCTAGCTTTTctgctctctccttctctgcttGCTCTCTTGCTAGcctgtctttttcttctttttctttttctgcttgttCTTTTCTTAGCCTTTCCTTTTCAGCTTGCTCTTTAGCCAGCCTttccttttctgctttctctttttctgcttgttctttttttagcttttctttttcagcttgCTCTTTAGCCAGCCTttccttttctgctttctctttttctgcttgttctttttttagcttttctttttcagcttgCTCTTTAGCCAGCCTttccttttctgctttctctttttctgcttgttcttttcttagcttttctttttcagcttgCTCTTTAGCCAgcctttccttttctgttttctctttaattaGCTTTTCCTTTTCAGCCTTCTCCTTAGCAAGCCTTTCTTGCTcagctctctctcgctctgccTTCTCTTTGGCTATTCTCTCTTCACGCacttttcttgctttctcttcaAGTCGTTTAGCCTCAGCTTCCTCTTTGGCTTTTTTGGCTGCAAGGATggcttttctctcctcttcctcttggGCCAGTATGCTTCGGACCTCAGCCAGTGCTAGTTTAGCAATCTTTTTTGCCTCAATCTTCTCATGGATCATCCGAAGCTGCTCCTTCAGAGCTGCCTTCAGTTTGTGCCCAATTTGTCTGGTAGAATGCTCTAGACGAGGATGACCAAAAGTGTTCAGTTTGGGGGATAAAATCTTGCTCTTTCCATGCAAAAAAAGGTAGTTCATGCTTGTGATAGGCTTATGCAATATAACTGTCATTTTCCCTATGAGGTCTTACACTGCCACAGTATTTAATGACTACATGTGCAAATTCAATTTCgttcttttaattattaaaagaacattacataattttttatagttttatctTATTGTGGAAAATGGCATGACAAGCATGTGCTACAACCTTGTTTTTAAACTCATTTGCTGTCACCATATTTGTGACGGTCCAACAAGATCTGATGGACATCTGATGATAAGCTCACTGCGTGGCACATACttgcataaaaatgttaaacCATAAGGAAAGTCCACTAGTCTGATGGTAGACAAAAGAAGCACATTCACTTCCTGGCCTTAGCCTCTTAGCCACTGTAGCCAAATGGGTACTGCTGCTGCTTCATGCTGTTCTGTGCTGGAACAGCCATAAGAGCACAATTATGGTCTCTTTTTCCATGTTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80969 lncRNA upstream 16611 21188531 ~ 21189134 (+) True G68299
TU80850 lncRNA upstream 309790 20864878 ~ 20895955 (+) True G68192
TU80696 lncRNA upstream 512634 20692263 ~ 20693111 (+) True G68070
TU80695 lncRNA upstream 512692 20692263 ~ 20693053 (+) False G68070
TU80678 lncRNA upstream 570180 20635348 ~ 20635565 (+) True G68054
TU80993 lncRNA downstream 24701 21234025 ~ 21234258 (+) True G68313
TU81190 lncRNA downstream 106931 21316255 ~ 21316515 (+) True G68435
TU81189 lncRNA downstream 111821 21321145 ~ 21321406 (+) False plag1
TU81294 lncRNA downstream 277650 21486974 ~ 21487488 (+) True G68523
TU81417 lncRNA downstream 523622 21732946 ~ 21749319 (+) True G68621
XM_026935832.2 mRNA upstream 11055 21189573 ~ 21194690 (+) True ggh
XM_034303658.1 mRNA upstream 11055 21191377 ~ 21194690 (+) False ggh
XM_026937311.2 mRNA upstream 193489 20935685 ~ 21012256 (+) False camk2d1
XM_026937031.2 mRNA downstream 74630 21283954 ~ 21287359 (+) False penkb
XM_026937030.2 mRNA downstream 74635 21283959 ~ 21287359 (+) True penkb
XM_026935823.2 mRNA downstream 88813 21298137 ~ 21303615 (+) True sdr16c5b
XM_026936593.2 mRNA downstream 104894 21314218 ~ 21323967 (+) True plag1
XM_026936594.2 mRNA downstream 104894 21314218 ~ 21323967 (+) False plag1
TU80896 other upstream 171992 21020258 ~ 21033753 (+) True G68232
trnaa-cgc other upstream 853260 20352414 ~ 20352485 (+) True trnaa-cgc
TU80337 other upstream 1050974 20147795 ~ 20154771 (+) False fcer1g
trnar-ucu_2 other upstream 1104647 20101025 ~ 20101098 (+) True trnar-ucu_2
trnah-gug_5 other upstream 1376855 19828819 ~ 19828890 (+) True trnah-gug_5
XR_003404073.2 other downstream 118022 21327346 ~ 21327420 (+) True LOC113540699
XR_004577949.1 other downstream 419752 21629076 ~ 21639890 (+) True mettl4
XR_004577950.1 other downstream 419752 21629076 ~ 21639890 (+) False mettl4
XR_004578015.1 other downstream 543092 21752416 ~ 21762301 (+) False LOC113540377
XR_004578017.1 other downstream 544694 21754018 ~ 21762301 (+) False LOC113540377

Expression Profile