RNA id: TU81222


Basic Information

Item Value
RNA id TU81222
length 2151
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G68462
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 21326046 ~ 21329250 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCACATCAAAAAACACTTGGTGTTTCTACATTCTACACATTtgtcttccaaaaaaaaaaaaaaaaaaacctttcacttCAGAGACATCACAACTTTCAATGTTCAGTACACATGCTTATTTGATTTAAAGTTTTCACATTTACTTCAAGCACTACAAGCTGCAGGTAGTGAACCTACTCATCTAAATTGGTCCTCAAGCTTACTGCAAAACTGAGAAAGTAAACTGGACCAGAAAACTATATTCCTTTACTTACATCAATGTAAAGTGGAAAAATTCCAAGCTTGTGTGCTTGCATCATGTAAAAAGAACCAGGGACTCTGCTCATTTATAAATGGCTTACCAAAGATCAGACAAGTTATGCTTGAACTCTAAATGCTCCATCAGACCACAAAGACAAAACCACACCATGTTCTATccaaattttcttttattgtgcAGACATGAATAGTTCAGTGCTGTTCACACTGGCAACCCAAAGCAGCTTATGCGTCTGCAATGGTAACCTCAACTTCGACACCGGGCTCGATGCTGATGCTGGTGATCTGCTTGACAATCTCAGACGGGCTGTGAAGGTCAATGAGGCGTTTGTGGATCCTCATCTGAAACCTATCCCAGGTCTTGGAACCCTCTCCACAAGGAGTCTTACGGGTGGTGATGCGCAGACTTGGTGGGCATGCGCACAGGTCCTTTCACCTTAAGGCTCTTCTCCTTGGCACCACGGACCAGATCAGCACACACTAAAGGGGCAAAAGTTTTATattagtaaaaatatatatacaaggCAAATCCTAAGCTTGTACATAGACATCGGCTCAGAATAGCGTATAATTTGTAATTCATACAGagaatcattttaatatataggTTGTCCTCATTGCCTtgggatggggaaaaaaaggaaaaaaaatctgattacaAACCTTTTTCAAGAGACTTGACGTTACGGCTGGTGAGGGTGATCCGGATGCGGTGGATGGCCACCTCAGGCTCAACAGGAGCTTTGCCAGTGTCTTTGAATGCCTGCAAGTTAGAAACAGCCATCAGGACACATTCTAGGAACAATTTAAATCTTAATTGTATACCATTTCACGTGCAGACTAATGTTCATTTAATTCATAGTTTAGcactttcaccaaaaaaaaaaaaagtaaacaccaATACCACCCCAACAGAAAGAGGGGACATTCAGTACACTTAAGGAGCCTTCACATATGTAGCTATTAGTCTGTTTTAATCAAAACCTGGTGTGATACAGTGAGAACAAGACACACAGCACAGACCAAAACAGCGAGTGAGATGTCCTGTCTCCAATCAAACTTCAGTgcagtaacaaaaataaaaataaataaaaagcaattaaaTCCTGGTACAATCAAAATGTAGGAAAGTGAACCAATCGTGTATTTTGGGTCATGGGCAGCTTTTTGTGCAAGGTGAGCTGCGAGCTACAAAGTGTCAagtgttctggatatttggattaacaaaacaggaaatattCCAGCTACAATAATCAAAATACTTTACAATAGTTATTCACTTTTATAGTTAGTTAGTGCAGTGAGAAACCAATCAGGCCAAATATCAGCTCTGATCCGATCCAGACTCAAAGTGCGTGAAAGAGGCAGTGACTGTAAGCTTTACCTAGAAACACCTTTAAGCATATTCAACATGAACAAATCTCCAAACTCATGGCATACACACCACATACTGAAGTACGTTTTAAAACTAGACGAAAAACAAACTATGCCACCATGTTTTCATAATGCGCTGCTAAATACAATACTCAAAATCTACGGGGATTTCTTTATTCGTGGTAGCGTTGTGCCAGTTCATCACTATCATTAacagagaaagttaataagtgCTCTCTagcaaaacataaacatataggACAATTAATCTTCAATCACAACTAGCAGCTGTTTTCTTAAAAGTCATGCTAACCAGCTAACGCGAGCCGCACGTGCCCGGAGAAACGAGCTAATTTATAAAAACCCCGAAATAATTTCAACATAGTTGCGTAAAAAACATGTTagagaaattaattatttaaaacatttaccaTAGTTGAGTATTCCTGACCGACTTATTCGAGGGAATAAAAAGCGAACAGCGGTGAGCCAGGAAGCACAAACGCACACCGAGTGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81229 lncRNA downstream 4930 21320818 ~ 21321146 (-) True G68466
TU81181 lncRNA downstream 12203 21304764 ~ 21313873 (-) False chchd7
TU80832 lncRNA downstream 509796 20778553 ~ 20816280 (-) False znf16l
TU80840 lncRNA downstream 521972 20803417 ~ 20804104 (-) True G68186
TU80746 lncRNA downstream 689877 20635904 ~ 20636199 (-) True G68108
TU81263 lncRNA upstream 77861 21407111 ~ 21408207 (-) True G68495
TU81290 lncRNA upstream 142382 21471632 ~ 21471839 (-) True G68519
TU81291 lncRNA upstream 143569 21472819 ~ 21473032 (-) True G68520
TU81365 lncRNA upstream 145337 21474587 ~ 21475776 (-) True G68577
TU81377 lncRNA upstream 167682 21496932 ~ 21501433 (-) True G68585
XM_026936598.2 mRNA downstream 12179 21304692 ~ 21313897 (-) True chchd7
XM_026936917.2 mRNA downstream 77439 21235253 ~ 21248637 (-) False LOC113540421
XM_026936918.2 mRNA downstream 82571 21235253 ~ 21243505 (-) True LOC113540421
XM_026936000.2 mRNA downstream 92391 21227985 ~ 21233685 (-) True sdcbp
XM_026936401.2 mRNA downstream 100096 21195948 ~ 21225980 (-) False unm_hu7910
XM_026936370.2 mRNA upstream 7858 21337108 ~ 21350811 (-) True LOC113540120
XM_034304122.1 mRNA upstream 25369 21354619 ~ 21371010 (-) False LOC113539989
XM_034304123.1 mRNA upstream 34675 21363925 ~ 21371010 (-) False LOC113539989
XM_026936104.2 mRNA upstream 47145 21376395 ~ 21379959 (-) True sox17
XM_026937164.2 mRNA upstream 70305 21399555 ~ 21401268 (-) True sox32
XR_003404107.1 other downstream 1182187 20143784 ~ 20143889 (-) True LOC113540737
TU80179 other downstream 1360238 19962616 ~ 19965838 (-) False snrpf
XR_004578057.1 other downstream 1382709 19931590 ~ 19943367 (-) False LOC113539792
XR_004578106.1 other upstream 39000 21368250 ~ 21371010 (-) False LOC113539989
XR_004578104.1 other upstream 39000 21368250 ~ 21371010 (-) True LOC113539989
XR_004578105.1 other upstream 39000 21368250 ~ 21371004 (-) False LOC113539989
trnaa-ugc other upstream 88918 21418168 ~ 21418239 (-) True trnaa-ugc
TU81579 other upstream 605276 21934526 ~ 21935169 (-) True G68760

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU193769 True 395 lncRNA 0.46 1 CI01000034 4362728 ~ 4363122 (+)
mexican tetra (Astyanax mexicanus) TU193769 True 893 lncRNA 0.42 2 NC_035912.1 21597269 ~ 21598440 (-)