RNA id: TU81775


Basic Information

Item Value
RNA id TU81775
length 238
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G68947
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 22244588 ~ 22244825 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCAGCTCAGCTATCAGGTAATATCTTTAATGTGGTTTAAAAAACATAGGTCTTTAACTGTCTGActgttgtgctttttaaataaagctgtacTGTTAATACAGTGTACATGTTTGACTACATACAATTAGGATTAGTGCATGTAATCAATACTAGCATTACAATATGCCTGCATTTACATTACACTGTATTTATAATTACTACTTACTAAGCACTATTagcagaggtgccaatattC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81502 lncRNA upstream 326812 21914806 ~ 21917776 (+) True G68687
TU81415 lncRNA upstream 482306 21754108 ~ 21762282 (+) False LOC113540377
TU81416 lncRNA upstream 482359 21754108 ~ 21762229 (+) False LOC113540377
TU81417 lncRNA upstream 495269 21732946 ~ 21749319 (+) True G68621
TU81294 lncRNA upstream 757100 21486974 ~ 21487488 (+) True G68523
TU81789 lncRNA downstream 138269 22383094 ~ 22387745 (+) True G68955
TU81788 lncRNA downstream 148014 22392839 ~ 22397101 (+) True G68954
TU81842 lncRNA downstream 282503 22527328 ~ 22527556 (+) True G68999
TU82061 lncRNA downstream 405118 22649943 ~ 22652447 (+) False LOC113540463
XR_003404049.2 lncRNA downstream 681985 22926810 ~ 22938741 (+) True LOC113540593
XM_026936559.2 mRNA upstream 4964 22190686 ~ 22239624 (+) False smarcd3b
XM_026936557.2 mRNA upstream 4964 22209820 ~ 22239624 (+) True smarcd3b
XM_026936558.2 mRNA upstream 4964 22209820 ~ 22239624 (+) False smarcd3b
XM_034303733.1 mRNA upstream 4964 22209820 ~ 22239624 (+) False smarcd3b
XM_034303734.1 mRNA upstream 4964 22209820 ~ 22239624 (+) False smarcd3b
XM_034303204.1 mRNA downstream 15167 22259992 ~ 22268392 (+) True abcf2b
XM_034303791.1 mRNA downstream 27650 22272475 ~ 22317291 (+) True prkdc
XM_026936958.2 mRNA downstream 84443 22329268 ~ 22338376 (+) True ncf2
XM_034303842.1 mRNA downstream 118857 22363682 ~ 22364458 (+) True LOC117597114
XM_034303926.1 mRNA downstream 122905 22367730 ~ 22382067 (+) True kif9
XR_004578015.1 other upstream 482287 21752416 ~ 21762301 (+) False LOC113540377
TU82445 other downstream 1073679 23318504 ~ 23320343 (+) True G69509
TU83028 other downstream 1863970 24108795 ~ 24109889 (+) True G69971
XR_003403979.2 other downstream 2614201 24859026 ~ 24871263 (+) False kif2c
XR_003404013.2 other downstream 3463002 25707827 ~ 25881109 (+) False tnr
TU84209 other downstream 3653310 25898135 ~ 25901843 (+) False LOC113539772

Expression Profile