RNA id: TU81789


Basic Information

Item Value
RNA id TU81789
length 4267
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G68955
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 22383094 ~ 22387745 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAAAAGTAAACTTTATTATTCCTGAACCACAAAATAGACTTCTTTGGTTGTACAAATTCACTAGTTACAGTCCTGAATGAGCTCTAACCCCCACATTCAGCCCCTCCATCACCTATGTAGCAAAAAAAGCCCCCCATCCCAAAGAAATCAAGAACAAGAAAGATCAAAACAACTGTCCTGCTGCAAAAATGTAGTGAATCCCATTCATtaattgtgtgaaaatgtgatttctgtctttacaaaaatacaataaatgatCAATTAGCCATTTCCCAAGTGTTTGTCATCCAAAACTGAATTTCAGTTAGCAAGAGCAAGATGAAAAACTACGATTAGTAAAGATAAAGACATTATTTGACATGATAGTGACCACAGTGTTGATGGCAGCTGGTTTGAGAATGATAAAATGATGTGTTctagagagagatggaaaatgtttttttttcctcacccaGGATtgaataacaacagcaacaaaaaaaataatgctttaaGCCAATATACATGCAGTGGACACCAGTTTAGACTGTGTCTGGATCCCACTGTCACTGCACACACTGGCTCAGTTTCACCTTGGAGTTTTGCTTCTCACAGCATTTTGTACATTATTCACACAAGGAATAAGCAATTGGCTTTAGATTTAAATCTAATTGGAAAAGAAAATTGGAGTAGCCACTCCAGAGACGAAGTATATGAACATGAGTCacatggaaaaaacaaaaaacaaaacaaacaaacaaaaaaaaacaaaactgggGAACATAAAAGTTCATCCCCCAAACCCAGTGTTACATAAATAGAAAGAATGGTACCATATTTTGATAagatggacacctggaccttcTCTTCAGACTGCTCCTTTAAAGTTCATGGTCTGAGAGTTTGTTGAAGtgaatatttattacaaatgtctttttttatagtCAGTCTGGTAATGGGAATGTTCCAACAAACAGCATGCAACATGGTCCAGGAAGCAGAAAAATGCCAAGGGGAGGATATTCTGGTTTTCACATGGACGTAACCACTGCACTTTGACAGaaagttgacattttttttttttttttttttttttctccatgtatGGGGCAGTGAAGGCTGTAGAATGATCGCTTGCCCTTCAAATGGCTGATCTTCTGgatatgtgaacattaacacattcaactttaaaaaaaaaagtcaggaactttttttacattaatatcagaggtttaaaattaaagtattaaaaagcACCCAAATCAGTATCATCTAAAATAATTTAGCTTGTTAAAAGCAaacagtaggaaaaaaaaacaaaaataaaagcaagagtGGAGTTTGCATGGTATGAAGGCCCTCCTTAACCATCCACTACAGAGCAAGAGGAGAAGCCTTCCACATCTGTGCTAAATGTTAGCTGGAAAGGCAAGACTGGCGTGCAAGAGACAAGAAGCTGTAGTGTTTCtttagaaagaagaagaagaaaaaaaaaacctgtcactGTGAAGGTCGACAACGAAGCGAGAGTGGTTGAAAGTCTTTCACACATTTCTgtgaatgtacattttagtaTTGTCTATACTTTGTAGCATCACTAGCTAATGTGCACTATGTTTTATAATctgtatcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaaattatgtGGGAACGGCTGTCTCTAGACTGCGACGGCCCTGTCGGAGTTTACGCTTGTTGCTGTACAAAGCCATCTCCTCCAGAGCAGATGTGGCGGCCACAGGAGCTACAGGCACATCAGCTTCTACACAGGAAActagagagagacatacagagacaaaCACTTTAGTACAAGTTCATAATGAGTTCTGACTTTAAAAGTATTGTGGTTTGCCGGTTCAGCCCCATCCACCTCTTCCCAAGCAAGGCTTCCCAATGCTGCACGATGAGGAAAAGCTGCACCTCGAGCccagtgagaaagagaagatATAACCAAAAACATATACTATAAAATaccaaaaagcaaaagcaaagcTGAACACTATATTATTCAGGTTATGATTGAGGAAGAGACAACAAAAACTGAAGATAATCATCAAAGACCAAACAGGTCTGGTGTTAAAGTAAGCAACAACCTTTCAGTAGGgtacaggttcccaaccctggtcctggagaatcCCTACGTTCTGCACTTTTTAAGTGTTTATTCAGCTAGTTAACAGCTTTTACTGAGTCAAAgcgggtgtgttagagcaggaaaaacactatgACTATGCAGGTGGCAGTACTCCAGGACTAGGGTTGGAAACCTGTGCAGTAGGGTATCAGATTTGAGCTTTTGTGGCAGGAACGCTACAATAATCCCACAACCAGCATGGTGAAGACACCAGTTGTCATGAAGCTCCAACAATCCCCAAATCCAAAAGCATGAGAAGCAACACTTCAAACGGTACAGATATTTAATTAGTCATGCACATAACATGGAATTAAAAATGCAAGTGGTGTGAAGGGTACAGATCTAGGCTGGTCGTGGAAGcagttacatttttgttaagTGCTGGACAGCATTTTGGATGCACcacaaacattaaatgaagGTGAGGTGATCATAAACTACTCTTTGATGCTGTTGCACTGTCTGTAGCCCATCAACAACACTATCCGCCCCACAGGAACCATCAGTGATCCTGTCTCCTTTAATAGAGCTCACATCCAGAGGGCGAAATGAACCCGACATGAGAACATTTTGGTGAGTTTCCAATCATGCAAATCCAGATTTGTGTAATGCACGGTGATATAGCCACACtatattttttagaaaactacaatttttatattgtggcatatgcaaatataaatgtatgaagATTTAAGCCAACAGTAGATATCATTATAATGGCCAATTTCAGAATGGGACCTCACTCTCATTACTTTCTCTTTAATTCTAATGGGCTTCCAGTTAAGATGATGTAAACCATAgcaacaaaatttttaaaaaacttccAAAGCCATCATTATGTGATTGCGGGAAGTGTTTAAAGTGTTGTCATCATTACTGTCCCCAGCACTTTACAAATCAAAACCTAAGTCTgtgatatttattaaaagtcaGCTGTAGTCTTTGTGAAACTGTACTGTAGGGTTACTTTGGGCCAAAAACATGAAGAATCTAGTACAGATCTTTGTGCTACACTTAATTATTAGAAAACACTGCTCATACATTATAAGAACCTAATTTGATTTTCAGGTTATTCATAGTAGGAGAAAATCCAAAGCATCACCACTTAAGCAGGCTTTCAGCAGCAAACGGTTCCTGAAAATATGCATTCAGTTAGGACCCAaacatgcactctctctctcacacacacacacatccatacatTACTCCTACCAAATTCAGATGATCACTTATCCTAGGAAACTGCCTGTGTCAAGGGGACAACAAGTGTCAGCAAAGTATAGTTCAGAGTGCATACTCAAACTCTTACACCCATAGCAACACATCTACTGATTAGTCATACACATAGGCTTACCTGGGCTAGTGGAGACATCACTGTTGAATCGAACATCTGTAGCATCTGGAGACTGCAAGACAAGAATAAGTGTAAGAGAGTAAAGACTGAAGGGCTTCTCAACCTGAAGTGAATGCCAGCACCACTGTAGGAGACAAAGCCATCAACAGGGGCTGCAGCCAGGGAACAGAAAACTGTGGTTTATAAACCAGCTGAAGTAGCCAGGCACAATGGCACTTCCTCACACAGGTAAGGGAACCTGCTGGTTTAGACCCACACAAATGCCCCCTAGTCTGGTATTAGCAGTTATCCATTAGAGGGCGAGGATATACATCACTGATAAAAGCActggaaaaagaagaagcaacACAAAAAAAGCCATACTTGTTTGATACGTAATAGaaatcacacaccaaacacccaAAAAAAGGCCAGCATGCTACACAGTCCTTCACCCCCAATATGGATGTACCTTGAGTGAACTGAGCTGTACCTGACCAAGTGCGACACAAAGCTCTAGTCCATGTCCTAGTTTCAACAATTCGTGACCTTGGTATTATAAAGTTTCAGGTGAAGACAGAAAGCCAGCTAAATCCTCATACTgcataaaaaattatttgtacaCATTTTCTATGATCAGGGTGAAGGCATTGCTTGACACTAAAACTCCACTGTCAAACAACACTTAACACACAATGAGGTCATAGCACACTCAAAAGGCCACCAAACAGCACATCAGATTTCaccaaaacatttacagttcttaaatatttttgttaattaccATTATGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81775 lncRNA upstream 138269 22244588 ~ 22244825 (+) True G68947
TU81502 lncRNA upstream 465318 21914806 ~ 21917776 (+) True G68687
TU81415 lncRNA upstream 620812 21754108 ~ 21762282 (+) False LOC113540377
TU81416 lncRNA upstream 620865 21754108 ~ 21762229 (+) False LOC113540377
TU81417 lncRNA upstream 633775 21732946 ~ 21749319 (+) True G68621
TU81788 lncRNA downstream 5094 22392839 ~ 22397101 (+) True G68954
TU81842 lncRNA downstream 139583 22527328 ~ 22527556 (+) True G68999
TU82061 lncRNA downstream 262198 22649943 ~ 22652447 (+) False LOC113540463
XR_003404049.2 lncRNA downstream 539065 22926810 ~ 22938741 (+) True LOC113540593
TU82192 lncRNA downstream 614253 23001998 ~ 23004102 (+) True G69294
XM_034303926.1 mRNA upstream 1027 22367730 ~ 22382067 (+) True kif9
XM_034303927.1 mRNA upstream 1027 22367730 ~ 22382067 (+) False kif9
XM_034303842.1 mRNA upstream 18636 22363682 ~ 22364458 (+) True LOC117597114
XM_026936958.2 mRNA upstream 44718 22329268 ~ 22338376 (+) True ncf2
XM_034303791.1 mRNA upstream 65803 22272475 ~ 22317291 (+) True prkdc
XM_034303843.1 mRNA downstream 96540 22484285 ~ 22495110 (+) True LOC113539999
XM_026936303.2 mRNA downstream 109813 22497558 ~ 22501861 (+) True atpsckmt
XM_026936302.2 mRNA downstream 117059 22504804 ~ 22525766 (+) True march6
XM_026936165.2 mRNA downstream 151073 22538818 ~ 22544587 (+) True ankrd33bb
XM_026936932.2 mRNA downstream 253997 22641742 ~ 22646438 (+) True si:dkey-94e7.2
XR_004578015.1 other upstream 620793 21752416 ~ 21762301 (+) False LOC113540377
TU82445 other downstream 930759 23318504 ~ 23320343 (+) True G69509
TU83028 other downstream 1721050 24108795 ~ 24109889 (+) True G69971
XR_003403979.2 other downstream 2471281 24859026 ~ 24871263 (+) False kif2c
XR_003404013.2 other downstream 3320082 25707827 ~ 25881109 (+) False tnr
TU84209 other downstream 3510390 25898135 ~ 25901843 (+) False LOC113539772

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1456579 True 694 lncRNA 0.43 2 NC_048579.1 26975679 ~ 26982457 (+)