Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_034303428.1 |
| length | 643 |
| RNA type | mRNA |
| GC content | 0.41 |
| exon number | 4 |
| gene id | LOC113540463 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 22649810 ~ 22652447 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0071806 | protein transmembrane transport | biological_process |
| GO:0006614 | SRP-dependent cotranslational protein targeting to membrane | biological_process |
| GO:0006412 | translation | biological_process |
| GO:0002479 | antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent | biological_process |
| GO:0030176 | integral component of endoplasmic reticulum membrane | cellular_component |
| GO:0015450 | P-P-bond-hydrolysis-driven protein transmembrane transporter activity | molecular_function |
| id | description |
|---|---|
| K07342 | SEC61G, SSS1, secE; protein transport protein SEC61 subunit gamma and related proteins |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU81842 | lncRNA | upstream | 122254 | 22527328 ~ 22527556 (+) | True | G68999 |
| TU81788 | lncRNA | upstream | 252709 | 22392839 ~ 22397101 (+) | True | G68954 |
| TU81789 | lncRNA | upstream | 262065 | 22383094 ~ 22387745 (+) | True | G68955 |
| TU81775 | lncRNA | upstream | 404985 | 22244588 ~ 22244825 (+) | True | G68947 |
| TU81502 | lncRNA | upstream | 732034 | 21914806 ~ 21917776 (+) | True | G68687 |
| XR_003404049.2 | lncRNA | downstream | 274453 | 22926810 ~ 22938741 (+) | True | LOC113540593 |
| TU82192 | lncRNA | downstream | 349641 | 23001998 ~ 23004102 (+) | True | G69294 |
| TU82369 | lncRNA | downstream | 632197 | 23284554 ~ 23284926 (+) | True | G69443 |
| TU82375 | lncRNA | downstream | 639053 | 23291410 ~ 23291998 (+) | True | G69449 |
| TU82453 | lncRNA | downstream | 678676 | 23331033 ~ 23331529 (+) | True | G69514 |
| XM_026936932.2 | mRNA | upstream | 3372 | 22641742 ~ 22646438 (+) | True | si:dkey-94e7.2 |
| XM_034303970.1 | mRNA | upstream | 3372 | 22642212 ~ 22646438 (+) | False | si:dkey-94e7.2 |
| XM_026936165.2 | mRNA | upstream | 105223 | 22538818 ~ 22544587 (+) | True | ankrd33bb |
| XM_026936302.2 | mRNA | upstream | 124044 | 22504804 ~ 22525766 (+) | True | march6 |
| XM_026936303.2 | mRNA | upstream | 147949 | 22497558 ~ 22501861 (+) | True | atpsckmt |
| XM_026935915.2 | mRNA | downstream | 18132 | 22670489 ~ 22677200 (+) | True | tcea1 |
| XM_026936312.2 | mRNA | downstream | 50622 | 22702979 ~ 22737767 (+) | False | atp6v1h |
| XM_034303663.1 | mRNA | downstream | 50622 | 22702979 ~ 22737767 (+) | False | atp6v1h |
| XM_026936311.2 | mRNA | downstream | 50622 | 22702979 ~ 22737767 (+) | False | atp6v1h |
| XM_034303661.1 | mRNA | downstream | 50781 | 22703138 ~ 22737767 (+) | True | atp6v1h |
| XR_004578015.1 | other | upstream | 887509 | 21752416 ~ 21762301 (+) | False | LOC113540377 |
| TU82445 | other | downstream | 666147 | 23318504 ~ 23320343 (+) | True | G69509 |
| TU83028 | other | downstream | 1456438 | 24108795 ~ 24109889 (+) | True | G69971 |
| XR_003403979.2 | other | downstream | 2206669 | 24859026 ~ 24871263 (+) | False | kif2c |
| XR_003404013.2 | other | downstream | 3055470 | 25707827 ~ 25881109 (+) | False | tnr |
| TU84209 | other | downstream | 3245778 | 25898135 ~ 25901843 (+) | False | LOC113539772 |
