RNA id: TU82375



Basic Information


Item Value
RNA id TU82375
length 496
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G69449
representative True

Chromosome Information


Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23291410 ~ 23291998 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


GTCAGAAAGTGACActctaaaaaataaagaaataacagGTGGTTTAGTGATGGGACGCTGTTTGTTGCCTGACGCGTCTCCTGACACACTCCATCTCCTCACCTCAGGGTTAGCGTCACCTGCTCACTCACCGGTTACCTCACTCCCGAGCAACAACAGGagaaaaagtttaataaatagataataatgataattaccACTTTTAAATCGAGGATGCCGTCTTTGGTCTCTTGAAGCAGTGTGACGAATTTGATGGCGAGGAGTCCCAAACTCTTCTCGTGCCGACTGGACCCGTTCGGAACCGCGTGCGAAACGCTCGAGCTGCTCGACTCAGCCATAGTACCATACTACACAACACGCTCCGTCCtcaaaacacactctcacaATTCATGTTTTATCCCCGCTTTTACCTCAGAGTAACACCAGAGAGctggatttttaaatgaacGGAAATGACGTTAGGTTACGGTTACCTTAGCAACCAGCAGGCTTCATC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU82369 lncRNA upstream 6484 23284554 ~ 23284926 (+) True G69443
TU82192 lncRNA upstream 287308 23001998 ~ 23004102 (+) True G69294
XR_003404049.2 lncRNA upstream 352669 22926810 ~ 22938741 (+) True LOC113540593
TU82061 lncRNA upstream 638963 22649943 ~ 22652447 (+) False LOC113540463
TU81842 lncRNA upstream 763854 22527328 ~ 22527556 (+) True G68999
TU82453 lncRNA downstream 39035 23331033 ~ 23331529 (+) True G69514
TU82463 lncRNA downstream 75663 23367661 ~ 23368677 (+) True G69522
TU82521 lncRNA downstream 155465 23447463 ~ 23457206 (+) True G69570
TU82635 lncRNA downstream 318955 23610953 ~ 23611157 (+) True G69641
XR_004578011.1 lncRNA downstream 362924 23654922 ~ 23767863 (+) False LOC117597085
XM_026936338.2 mRNA upstream 14609 23273523 ~ 23276801 (+) False ackr4a
XM_034303654.1 mRNA upstream 14609 23273545 ~ 23276801 (+) True ackr4a
XM_026936337.2 mRNA upstream 14609 23273545 ~ 23276801 (+) False ackr4a
XM_026937016.2 mRNA upstream 60957 23215075 ~ 23230453 (+) True si:ch211-106h4.6
XM_034303414.1 mRNA upstream 77219 23199939 ~ 23214191 (+) False si:ch211-106h4.4
XM_026936872.2 mRNA downstream 53060 23345058 ~ 23349627 (+) True rnf182
XM_026936893.2 mRNA downstream 61971 23353969 ~ 23376185 (+) False ranbp9
XM_026936894.2 mRNA downstream 61971 23353969 ~ 23376185 (+) False ranbp9
XM_026936892.2 mRNA downstream 61973 23353971 ~ 23376185 (+) True ranbp9
XM_026936928.2 mRNA downstream 95011 23387009 ~ 23391001 (+) True epdr1
XR_004578015.1 other upstream 1529109 21752416 ~ 21762301 (+) False LOC113540377
TU82445 other downstream 26506 23318504 ~ 23320343 (+) True G69509
TU83028 other downstream 816797 24108795 ~ 24109889 (+) True G69971
XR_003403979.2 other downstream 1567028 24859026 ~ 24871263 (+) False kif2c
XR_003404013.2 other downstream 2415829 25707827 ~ 25881109 (+) False tnr
TU84209 other downstream 2606137 25898135 ~ 25901843 (+) False LOC113539772

Expression Profile