RNA id: TU82445


Basic Information

Item Value
RNA id TU82445
length 1424
RNA type TUCP
GC content 0.44
exon number 2
gene id G69509
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23318504 ~ 23320343 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTGAAATCATTTTCATCAGCAGCCACACTATTTTGATTTAATAACTTTATTCATGCAATAAGTGATATTAAAAAACTGAGCATCTTCAAAGGGCTGTAATGAAATATCATTCACAATTCAAACATGGATGGTGTATTGTAAATTTGAAGGAATAAATTGAATTCCAGTTTTGGCAAGCCAGTCTTGCACTTCATTCTGGAGAGCATGGACTTAGAATTACAAtgtacaaaacagaaaaataatagtTTGACTAGAAAATCAAAGTGCATTGCCCATATTCAAATAAACCCCTCAGAGTTTGCAATACACATAAATTCAGAAAGTACTGATTTGAAATTATCCCTATAAAGCACAGGCCTTCTTCTCCTGTTCTGAACTGTTCTGAAGTGTGGGCTCTGGCTTCATTACCAGGAGGTCTCTGTTGACTTTAGCATGTTTGTGAGTTCCTTTTGAAACACTACACTTGGGTTGAGTGTTAAAGCTTTTCAGATAATGGCATGTCCTCTTATTTCTTATAGTGACCCAGGTATCCCCTCAGGAAATCCTCAAATCGTGAGACCTGGTACTGTGGTGCTACATTGGCGTTGCTGGTGTCATCACCACGTTCCAGCTCATCCTTGGGATCCTCAGCTGCCTTTTTGTTGTCTGTGGGTCCTGCACGGCGCAGACGGCAGTTGTAGTCAGTTTCAGGATCACAGTCAGGATGGGGTAAGATGATGCCACCCTGCATGTTCTCGAATGCCTCAATGGAAGCCGGAGGGGAAAAATTGCTACAGCTGGGGTCATATGGATGGCATTCTGTGGCACTGGACTTTGCTTGTTGGCTAATcggtaatggtttcattaaggCAGCTAGGTGGAGGGGAGTCAGCTCACCTTGTGGCACATACTGCAGCACAGGAGCCTTAAGTGTGACCAGCCTGTTAGCAGTGAGTGGGTTGCACCCCGTTTCAAACAGCGGGTTGCAGTGCTGCTTGAGGACCTACAGAAAAGATACAGTAGGGATCAAGATATGGGTTACACACATTCACTGGAGCTTGCTTCATGGCAGCAGGCAAAACAATCTTAGCCGTGGGCTTGCTGGTGTACTCTGGAATGCAGTCAGGGTCATCTGATTTAGCACAGGCCTTGTAGACCTCACTCAGGTGGGTGAGGTAATGTTTGTAGGAATTGTCCCCATCAACCCGGTGCTTGTTCTGCAAGTAGATCAAGTAGAGCTGGTCCAAACTCTCAATCTGTAGATGTGAAAACAGAGGTGAATGGCTCTTAAGGGTGAAAGTGATTTGTGCCTGGCAACAATCTTTCAACAACAGCACTATTAGTCGAGTTATGTATCGTATGAGATTACTCACTCCCTCCTGGTTGTGGGTGCTCATGTAGTACTTGTACCAGGCCCAGAATTCAGGCAAGCGTTTGTAGTAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82375 lncRNA upstream 26506 23291410 ~ 23291998 (+) True G69449
TU82369 lncRNA upstream 33578 23284554 ~ 23284926 (+) True G69443
TU82192 lncRNA upstream 314402 23001998 ~ 23004102 (+) True G69294
XR_003404049.2 lncRNA upstream 379763 22926810 ~ 22938741 (+) True LOC113540593
TU82061 lncRNA upstream 666057 22649943 ~ 22652447 (+) False LOC113540463
TU82453 lncRNA downstream 10690 23331033 ~ 23331529 (+) True G69514
TU82463 lncRNA downstream 47318 23367661 ~ 23368677 (+) True G69522
TU82521 lncRNA downstream 127120 23447463 ~ 23457206 (+) True G69570
TU82635 lncRNA downstream 290610 23610953 ~ 23611157 (+) True G69641
XR_004578011.1 lncRNA downstream 334579 23654922 ~ 23767863 (+) False LOC117597085
XM_026936338.2 mRNA upstream 41703 23273523 ~ 23276801 (+) False ackr4a
XM_034303654.1 mRNA upstream 41703 23273545 ~ 23276801 (+) True ackr4a
XM_026936337.2 mRNA upstream 41703 23273545 ~ 23276801 (+) False ackr4a
XM_026937016.2 mRNA upstream 88051 23215075 ~ 23230453 (+) True si:ch211-106h4.6
XM_034303414.1 mRNA upstream 104313 23199939 ~ 23214191 (+) False si:ch211-106h4.4
XM_026936872.2 mRNA downstream 24715 23345058 ~ 23349627 (+) True rnf182
XM_026936893.2 mRNA downstream 33626 23353969 ~ 23376185 (+) False ranbp9
XM_026936894.2 mRNA downstream 33626 23353969 ~ 23376185 (+) False ranbp9
XM_026936892.2 mRNA downstream 33628 23353971 ~ 23376185 (+) True ranbp9
XM_026936928.2 mRNA downstream 66666 23387009 ~ 23391001 (+) True epdr1
XR_004578015.1 other upstream 1556203 21752416 ~ 21762301 (+) False LOC113540377
XR_004578017.1 other upstream 1556203 21754018 ~ 21762301 (+) False LOC113540377
XR_003404030.2 other upstream 1556203 21754080 ~ 21762301 (+) True LOC113540377
XR_004578016.1 other upstream 1556203 21756781 ~ 21762301 (+) False LOC113540377
XR_004578018.1 other upstream 1556203 21757848 ~ 21762301 (+) False LOC113540377
TU83028 other downstream 788452 24108795 ~ 24109889 (+) True G69971
XR_003403979.2 other downstream 1538683 24859026 ~ 24871263 (+) False kif2c
XR_003404013.2 other downstream 2387484 25707827 ~ 25881109 (+) False tnr
TU84209 other downstream 2577792 25898135 ~ 25901843 (+) False LOC113539772
TU84572 other downstream 2908421 26228764 ~ 26229191 (+) True G71385

Expression Profile