RNA id: TU82521


Basic Information

Item Value
RNA id TU82521
length 1320
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G69570
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23447463 ~ 23457206 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATGAATAGTTCACAAAATATTCAACTCAATAATCACAAATAGTGAGGACATACTGTAAGTAAACGAACctaattttgtaatattttgcatattacattattaatatcCATCTGTGGACATTATTTCCAACACAGAGGCCTTTAggatgtaattttttattattattaagattgTTTAAGTCCAGATTGACAGTGGAGGACATTCTGAGGACACAAAAGAGCAGATCATTGTCTTCTTGTTACCTTTTGGAATGTCTACTTCGTTGTCCTTAAAGCTGCTGTCATGTTGAACAGAGCAGGTGAATTTATTGTTCATGGCTTTGTGTTGGTCTATGATGAGCATGCTGGTTATTTGGACCGGattctcatctctctgctccaGCTGCTCAGCATCTTTCAGCTCCAATATGCTTCCCCTCTGATCTTTTGCTTTCCACGTGAATCTCACCAGGTCTGGGAACATGCCTCTCGCCTGGCACAGCAGAACAGACTTTCCATTTTGTGGCTTGGACACTGGATACGCGGACACTTGAGGCTGTTTGACCTCCTTCCCATTTTCTGCATCATCAGAGGACATGCAAATATTCTTATTAGTGAGCAATCAATAAACACAATGAAAGAatagctattttatttatttatttatttgagtcaGTTGGGTAATCATACACAATTGGGAATTATGatgtttcaaattaaaaatgcaatatttttctcATAAGCACAGTGAAATGGGCCTGGACTATTGACAGAACAGGGACATCAAACATCAGGTCCTCGAGGAGCACAGCACTGAATGCAGAATTTACAGTTTACTCCAGGTTACAGTTTACTTAGGTTTATGTATAGTGAAGTTATGATCATGATTCTTGAATGTGGCGGTAAGCCTTGTTATTTAACCCAAACAATGGAGGAATTTTAACTGTTATTGAAATAGTCATTTTTATCACCATCAGTTACCAACTTCTACAAGATATCCTTGAACCAagagttatttattaattcatttattatttttcgtGTTTACACATTCCACTTTATCCCTGAGTTCTGCAACAAGGTCtaatttaactttttcagcatgTTACTGGATTAGCAGTGCTAAGTATGGATCAGGACTACTTACAAACAGGGCCATCAAACAACAGGAGAACAGCACTGAATGCAGAATTTACAGTTTACTCCACATTAACCCATCTAATTCCCCTCATACTGTAATTAGTCATTCATTATTAAAGGACATGACATGTTAAACAATAAACTACACTGACATTTAcacactatttaaatgtttagtgaataaaaaaatgacataactTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82463 lncRNA upstream 78786 23367661 ~ 23368677 (+) True G69522
TU82453 lncRNA upstream 115934 23331033 ~ 23331529 (+) True G69514
TU82375 lncRNA upstream 155465 23291410 ~ 23291998 (+) True G69449
TU82369 lncRNA upstream 162537 23284554 ~ 23284926 (+) True G69443
TU82192 lncRNA upstream 443361 23001998 ~ 23004102 (+) True G69294
TU82635 lncRNA downstream 153747 23610953 ~ 23611157 (+) True G69641
XR_004578011.1 lncRNA downstream 197716 23654922 ~ 23767863 (+) False LOC117597085
XR_004578009.1 lncRNA downstream 197716 23654922 ~ 23767863 (+) False LOC117597085
XR_004578008.1 lncRNA downstream 197716 23654922 ~ 23767863 (+) False LOC117597085
TU82695 lncRNA downstream 197731 23654937 ~ 23767812 (+) False LOC117597085
XM_026937189.2 mRNA upstream 45733 23392658 ~ 23401730 (+) True stard3nl
XM_026936928.2 mRNA upstream 56462 23387009 ~ 23391001 (+) True epdr1
XM_026936893.2 mRNA upstream 71278 23353969 ~ 23376185 (+) False ranbp9
XM_026936894.2 mRNA upstream 71278 23353969 ~ 23376185 (+) False ranbp9
XM_026936892.2 mRNA upstream 71278 23353971 ~ 23376185 (+) True ranbp9
XM_026935925.2 mRNA downstream 137755 23594961 ~ 23608201 (+) True otulinb
XM_026937124.2 mRNA downstream 157234 23614440 ~ 23641469 (+) True ankhb
XM_034304162.1 mRNA downstream 191065 23648271 ~ 23650633 (+) True mycb
XM_026937348.2 mRNA downstream 191065 23648271 ~ 23650633 (+) False mycb
XM_026936232.2 mRNA downstream 556650 24013856 ~ 24016743 (+) True LOC113540051
TU82445 other upstream 127120 23318504 ~ 23320343 (+) True G69509
XR_004578017.1 other upstream 1685162 21754018 ~ 21762301 (+) False LOC113540377
TU83028 other downstream 651589 24108795 ~ 24109889 (+) True G69971
XR_003403979.2 other downstream 1401820 24859026 ~ 24871263 (+) False kif2c
XR_003404013.2 other downstream 2250621 25707827 ~ 25881109 (+) False tnr
TU84209 other downstream 2440929 25898135 ~ 25901843 (+) False LOC113539772
TU84572 other downstream 2771558 26228764 ~ 26229191 (+) True G71385

Expression Profile