RNA id: TU82700


Basic Information

Item Value
RNA id TU82700
length 4283
lncRNA type inter_gene
GC content 0.40
exon number 5
gene id LOC117597085
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23654922 ~ 23767863 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtgtgtgtgtgtgtgttgaggagcACATGGACGACAGAGGACGAGATTTAGCAGCGCTGCTAATTAACGCAGCCCATCGCCTGGGAAAAATGGGCAACGCAGGACGCATTTAAACACCGGGAATGCCGTCACAGGGTTGTGTTTCACGTCAGACGAGCAAAAAATGtgAGCTGCCTTCAAGGTAAATCATTTTCAGAAATGCCTATGATTGGCACTGACGCGCACCCtgagggtccctggtttgatcctgagctcaggttactgtctgaggagtttcacatgttctcgcTGGGTACatgtggtttcctcccactgtccaaaagcatgcagctcTGAACACCTCTGCCTTTTTGACTCCGTTTTGGATGAGAGATCATACAAAGGAGCATCCTCAGGAAAAATCATGAAAACTTGTCCCACAAGGCCTGCAAGTTTTGTGCCGGAATAgcttggtatttggagctatccacaATTCCCTCTATATCGACTaaagccccagtcccagctgaagagaagcagccccattgcataatgctgccaccaccatgcttcaccatggCCTCATGTCCTCCCGATGAAGCTGTTTCGACAGGGGGTCAGGATATTGATAAAGGACACTCGAGGCTTACATTAGATGACCGACTAAGAAGAAGAAGTCACTGCAGGAGAGGAGAAGCGAGACCTTCATATCTATCTGCTTACACATACCTTGAGCTCATCGAAGCGCAGAGTGAAGTGGAGGATCTCTGCGAATTGGCGTGCCAGAGCCTGCTCCTGCTCCAAGTGCTGTGTGGGGCTGCAGCGTGCACTCGTTAGGAATCCCAGCAGGCCATGCAGGGCACCTTCTGCACAACCGAGACAACAGACAAAGAGGtaatattacattacaattGACCCAATGGATGGAAAGAGGGGTAGATTGATGGATGGACAAATAGTTTGATGGATGGTGGTTAGTTAGAGATTTAGATGGATGAATGTGCCAGATCAATATCATAAATAGAGAATTAGTGAAAGACAAACTCAGTGGGTTGAGCAAATGAAAAAGGAACAGGATAAGGCCTTATGGCAAGAATCCAGTTGAAGGGTGTTTTCCAGAGACCTGCCTAGGGCAAAACGTATTCataatttctattttaatttagGTTCACACAGAGAATGTGCAGACAGTGTGCACTCCTCACCCAGCAAGAACTGGAGTGCATCACGGTGCAGTGAGCTGCGTAGACCTATTTATATCCACATGCATTTTTAACTGTCTAGTCAAATATTTGGCAGACACACATAAATCTTGGTTGCGAGCAGAGACATTTAGTTAGTGTAGGCCTTTGAAACCTCTTCTCCAGAGACTGCTGCAGTTGGTTGGTGATTATTTGAGATTAAGGGATGTGTCATAGTTAATTGGGACATGACCTACTAATCTACGCTGCTACCTACAGATCTGATACAAAACCCTAAACCTGTACTGCCTTTTTACTTCCTATTAAGTTTTTAGTGATTTTTTGTGATCACTGTAGATTTTATTAATCATTAGATAGAATACTGTgtggcattttgtgtgtgtatgtaaagcTTACTGTACCTTCCACAACTTGTTTATTCAgccagtaataataaatatcgGAAATTAGATTCAGCATTAAATTTAACACAATTAAATTGCACAATTTAAAGAGTGAACAGAAAGCAATATTTCACTAGATGAGGCCTCAGAGGTTTGCCTCACCCAGAAGAATATCTTAATCCAATTACAACGCATTGTTGCCTGGCTCGAGGCTAACTACCACCAGCGAGCATGAACTGCAGACATGCACTGACtattaacacaaacataatATGAACCTCATAATCCTAATAGCATTAACCTCACCACAACACTCCACCTTGGAATAGCCTTCCAGTATGACATTACATTACAGCCAGGTCTATTCACTGTTCAAGTAACATCCATTTGCGAAAGTAAATCCATGTATATGACAATACAAAGACAGTAAATAAAGCGAAGGAATTGTGCATGCAGAAAAGACATAAGAGTGATGGTGAGAGCTATAGATTGAGAGAGGAGTGAGGCAGAGGCTGGCGAAGGTTATACAACTCCTTTATCTGGTTGCCGATGCAAGCTTTGCTGAGTCAAACTCTGATCATCACATCGTCTGACGTGAGCGGCAATCAATACACAAAGTGTGTTTGTGAAGCTTAGATTCTTGAGAGTTCAAAAACACAGCTTAAGTTCAGTCTAGGCTTGATACTGATTTTTCCCTGCTCACAATTTGCCGttaaaaaaggacaaataaTCGTCTAGAATGTTCACCGTTTAAGGAAAGTACAGAaggctgtaataataataataataataatatcagctgtgcagtcgggaactgcttgctggcagtggcaatcGCAAAAGATCAGGTGTATTTTAGGTGATTCTGCAAcatgtgcagtaaacagtaaaataaataaataaataaatatttattgtatgttttctttataaacattttcatttcatttggtcCGCTACTGCTGAGTTTTTTAACGCATCTGAGCTCTGACTGGAGCAGgagagcaacaaaaaaaatcaataattttcattacaaataataatggaaaaaggggtatatttaacatttcattgTTGGTGAAAGAATCTTTTTAAGGTCAAAATCTTTCAGCCTTTTCTCTAGAAAACCGGAAGTGACATTTCTGGCCAAAATTATCTGGCGACATCCttaataaatacagttaacCAGTGTTCATTATATACTTGTCTCTATTAGCTACGTTGAACACAGgctgatattttatttcacactaaTGAActaaaaacattctccattctCTTAGTTTGACAGAAAGTTTAGCCGAGAGCCGGGGTGTGAGATGGGGGAATGGGGCAGGGCTGATTAATATTGGAGAGCTCAAATCAACTACACAAATCATTGCAGATTAAAATGACGACTGGCTGTTTTATTGGGAAGgaaaagactgctcttttggtgtatttttgagcGATAACTCTTACTAGTGTACTCCATTGCTGAACTCCTGCTCAAAATGAAGCCatgttggcaggtctggtaatttaatataataatcagACTAAATGTCACTGGATATTGTAGTAATGTAGTATTGGGTAGAGACGATTTAACTgttatatcgcacaagcctagttTACACGCATTCTACAGTCCCTTTTTCTGCACAAGATTAAATGTtagtatgcatgtgtgtgtaacaaaGCCACAGTGAAGTCTCATACCCAGCTTTAGAGAGAACTCGTAAAACTTCTTTAGTTTGCCCACTAGCGGCACCACAGCAGTCCAGGCTTTCTCTTGCACACTTTCATTAGACGGCTGCTGGATGGCctggaaacacaaaacacactccatAAACATTTGCCTGCTGAACAGAATAACTTTCACATGAACTCAAACTGACAGCATTTCCCAAGCACAGCTCCTTTTTAGCTTGCTCTGAACACTTGTCTCAGCACTATGGCATTAAACTGCACTCCTCCAACACTCTGTATGTGAGTCACCTTCGCAAAGACTCGATAAATAGATGACGTGTTTATTCAGGTGTGATAAAGCAGCTTAAACACCTCAGTGACACAGTGTTTCAGGAATGCAGTTTGATTCAGATGGATTTCAGGAATGTGTTTTAATTCTGTATCTGGTTCATCTTTCCTCATGGACAGGGTGCTGGGCTCATGTTGGTTCAGGCAACCAGCAAAGTTTAAGAACAGCCCATTGTTTCCACTGGTTTAAGAGCCAAACCATTAAATAATCCATTGTGAGTTTATGAGCAGTATAAAACTAATAAGAACTGAGAAAGATTTTACAAGTTTTACCTCTGAGAACACCTTTTATCATCTAATCATCGTCAAAGAATTCACAGCACAAAAAAAGACTTGATACATTTTTATAGCttttagttgtttttgtttacattagCATTAGAAATGGaacttttacttatttaattgcAATTTCCACTAAAGAGGTTCATTTTTCGTCAGATAATTTATTCATCTACAATATTAATTTAGTtaggggtgttttttttgttgtttcttaaAGAGATGTTTCTGAGAATTACTTGtccataaaatctcttacaTTGTCAATATTTATCGAGTTGTCTCTATAAGCTGGCAGGGAGAGTGGCTATGCGGAAagaccaaaataataataataataataataataataataaataaatatctatctAGAGGGGCAGTATGCAATGCTGTTTAGCCAATAATAGCTGGTTGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82635 lncRNA upstream 43780 23610953 ~ 23611157 (+) True G69641
TU82521 lncRNA upstream 197731 23447463 ~ 23457206 (+) True G69570
TU82463 lncRNA upstream 286260 23367661 ~ 23368677 (+) True G69522
TU82453 lncRNA upstream 323408 23331033 ~ 23331529 (+) True G69514
TU82375 lncRNA upstream 362939 23291410 ~ 23291998 (+) True G69449
TU82749 lncRNA downstream 80115 23846645 ~ 23849514 (+) True G69735
TU82750 lncRNA downstream 88545 23855075 ~ 23857571 (+) True G69736
TU82897 lncRNA downstream 155270 23921800 ~ 23922561 (+) True G69870
TU82898 lncRNA downstream 155587 23922117 ~ 23922696 (+) False G69870
TU82909 lncRNA downstream 173711 23940241 ~ 23943072 (+) True G69878
XM_034304162.1 mRNA upstream 4304 23648271 ~ 23650633 (+) True mycb
XM_026937348.2 mRNA upstream 4304 23648271 ~ 23650633 (+) False mycb
XM_026937124.2 mRNA upstream 13468 23614440 ~ 23641469 (+) True ankhb
XM_026935925.2 mRNA upstream 46736 23594961 ~ 23608201 (+) True otulinb
XM_026937189.2 mRNA upstream 253207 23392658 ~ 23401730 (+) True stard3nl
XM_026936232.2 mRNA downstream 247326 24013856 ~ 24016743 (+) True LOC113540051
XM_034304069.1 mRNA downstream 254535 24021065 ~ 24024165 (+) True LOC113540619
XM_026937230.2 mRNA downstream 323419 24089949 ~ 24104733 (+) True klhl18
XM_026936985.2 mRNA downstream 355023 24121553 ~ 24127236 (+) False zgc:136930
XM_034303446.1 mRNA downstream 355023 24121553 ~ 24127179 (+) True zgc:136930
TU82445 other upstream 334594 23318504 ~ 23320343 (+) True G69509
XR_004578017.1 other upstream 1892636 21754018 ~ 21762301 (+) False LOC113540377
TU83028 other downstream 342265 24108795 ~ 24109889 (+) True G69971
XR_003403979.2 other downstream 1092496 24859026 ~ 24871263 (+) False kif2c
XR_003404013.2 other downstream 1941297 25707827 ~ 25881109 (+) False tnr
TU84209 other downstream 2131605 25898135 ~ 25901843 (+) False LOC113539772
TU84572 other downstream 2462234 26228764 ~ 26229191 (+) True G71385

Expression Profile