RNA id: XR_004578010.1


Basic Information

Item Value
RNA id XR_004578010.1
length 1688
lncRNA type inter_gene
GC content 0.46
exon number 6
gene id LOC117597085
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23654922 ~ 23767863 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGCAGATGGTCATTGTGTTATACCCAGAGAGATGTGTGTTTCTCTAGCAGCTGATTTACCTCTGGGGAGAGGTAGCTCCTGCCAGAGTACTTGGACTTTTCCTGAAGCGTGGTGTTACACAGGattcttggtgccagatggcACATGACTTTGGCTTGTTCTGTCATCAGGGGCCTGCTACTGGAGGAAAGCCTGCGCAGAGGATGTAGGTGTAAACAGCAGAGCTCTTGGTCTTTTCACATTTGCCATAATGctcTGAACACCTCTGCCTTTTTGACTCCGTTTTGGATGAGAGATCATACAAAGGAGCATCCTCAGGAAAAATCATGAAAACTTGTCCCACAAGGCCTGCAAGTTTTGTGCCGGAATAgcttggtatttggagctatccacaATTCCCTCTATATCGACTaaagccccagtcccagctgaagagaagcagccccattgcataatgctgccaccaccatgcttcaccatggCCTCATGTCCTCCCGATGAAGCTGTTTCGACAGGGGGTCAGGATATTGATAAAGGACACTCGAGGCTTACATTAGATGACCGACTAAGAAGAAGAAGTCACTGCAGGAGAGGAGAAGCGAGACCTTCATATCTATCTGCTTACACATACCTTGAGCTCATCGAAGCGCAGAGTGAAGTGGAGGATCTCTGCGAATTGGCGTGCCAGAGCCTGCTCCTGCTCCAAGTGCTGTGTGGGGCTGCAGCGTGCACTCGTTAGGAATCCCAGCAGGCCATGCAGGGCACCTTCTGCACAACCGAGACAACAGACAAAGAGACCTACTGCATTTTGGTGCTGGAACTGATCCAGTTGTGGCGACTGTGAAGCAGCTCTTTTGTGGTGTAAATGCACAGAACAGTTGGAGATTAAACACCAGCTATGGAACCAGCCCCAGCAGCTTGATTTTGGAAAAGTGCTTTTGCATGACACTGTCCTTTATGCCCTGCCTATACATATTTCATACATTCACCTGTCTAATGGCTTCTCCAGCTCCACTGTAGGACTGCAGATCCTCTAAAACACTCATGGCCTCCATCAGAACCTTGTTCACCTGTTCCCATAACTCCCTCTCTGCCTCAGTGGGCTGAGCATCTGTGAAAACAGCAGCACTTGGttacaccctcacacacacacacacacgcaggcacGCACATGCATGAATGTACAGTCAGGTTCAGAAGTCTGAGTCCACTAGCAACAactggttttatttcatttcatcatgtaTACAAAATGTTACAACAGACGTTTTGCCATTTGAGATCACCCAGTATGAAACAGACATATAGCTGAATGCTCTGTTAGCACAGTGattcttttctgtttaaaaactgTTGTGATTTCATTGTAACACACTTGCTTTCAAGTTTTAATTGTTGAGATGACAGTGTCCCAACCTTGCATCGTTTTACTTTTTGGagaaatatatttgttatagtaaaataaacacactacatAAACTTACTTTCAAAGTCCAGGAAAAAGTTCCCCGCATTGTTGTCGATGTCCCTCGTCAGAACCTTGATCAGATTCCCCATGCCGTCCAATCAGAAACCTGACGAGAGGAAGAGGAGTGAATTAGTGACACATCCCACTGAGAACATAAAGATCATATTAATGTATCAtgctgtgtaactgtgtgtggtCCAATAAATCAGCGAATGTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82696 lncRNA upstream 8817 23654937 ~ 23656038 (+) False LOC117597085
TU82698 lncRNA upstream 8817 23654937 ~ 23656038 (+) False LOC117597085
TU82635 lncRNA upstream 53698 23610953 ~ 23611157 (+) True G69641
TU82521 lncRNA upstream 207649 23447463 ~ 23457206 (+) True G69570
TU82463 lncRNA upstream 296178 23367661 ~ 23368677 (+) True G69522
TU82749 lncRNA downstream 78782 23846645 ~ 23849514 (+) True G69735
TU82750 lncRNA downstream 87212 23855075 ~ 23857571 (+) True G69736
TU82897 lncRNA downstream 153937 23921800 ~ 23922561 (+) True G69870
TU82898 lncRNA downstream 154254 23922117 ~ 23922696 (+) False G69870
TU82909 lncRNA downstream 172378 23940241 ~ 23943072 (+) True G69878
XM_034304162.1 mRNA upstream 14222 23648271 ~ 23650633 (+) True mycb
XM_026937348.2 mRNA upstream 14222 23648271 ~ 23650633 (+) False mycb
XM_026937124.2 mRNA upstream 23386 23614440 ~ 23641469 (+) True ankhb
XM_026935925.2 mRNA upstream 56654 23594961 ~ 23608201 (+) True otulinb
XM_026937189.2 mRNA upstream 263125 23392658 ~ 23401730 (+) True stard3nl
XM_026936232.2 mRNA downstream 245993 24013856 ~ 24016743 (+) True LOC113540051
XM_034304069.1 mRNA downstream 253202 24021065 ~ 24024165 (+) True LOC113540619
XM_026937230.2 mRNA downstream 322086 24089949 ~ 24104733 (+) True klhl18
XM_026936985.2 mRNA downstream 353690 24121553 ~ 24127236 (+) False zgc:136930
XM_034303446.1 mRNA downstream 353690 24121553 ~ 24127179 (+) True zgc:136930
TU82445 other upstream 344512 23318504 ~ 23320343 (+) True G69509
XR_004578017.1 other upstream 1902554 21754018 ~ 21762301 (+) False LOC113540377
TU83028 other downstream 340932 24108795 ~ 24109889 (+) True G69971
XR_003403979.2 other downstream 1091163 24859026 ~ 24871263 (+) False kif2c
XR_003404013.2 other downstream 1939964 25707827 ~ 25881109 (+) False tnr
TU84209 other downstream 2130272 25898135 ~ 25901843 (+) False LOC113539772
TU84572 other downstream 2460901 26228764 ~ 26229191 (+) True G71385

Expression Profile