RNA id: XM_026937230.2


Basic Information

Item Value
RNA id XM_026937230.2
length 2112
RNA type mRNA
GC content 0.54
exon number 10
gene id klhl18
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 24028106 ~ 24106223 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGCTCCAGTGACACCGCCCATGCCTCCCTCATGCTGCTGTAACGCAGCGCCACCGGCTCCTTCTGATCACACGAGCTACGGTGTCCCGCGAAGCTCAGAAAGCATCCGCGCTCGCGTTGTTTAAATTACTTCTCCCTTCCTTCAATGACGATGGGTGACATGATATCCGAGGAACTGGAAGATTTGATGCATTTCTCCGTCCACGATTTACCAGCTCGTGGTTATTCGGTTATGGAGGAGATCCGACGACAGGGGAAACTCTGCGATGTTACTCTTAAGgtggGAGAGCATAAGTTTAGTGCCCACAGGATCGTTCTGGCTGCGTCCATTCCCTACTTCCACGCCATGTTCACCAATGACATGGTCGAGTGCAAACAGGATGAGATCGTCATGCAAGGCATGGATCCCAGTGCTCTTGAAGCGCTGATCAATTTTGCATATAACGGACACATAGCCATAGATCAGCAGAACGTTCAAGCGCTCCTGATCGGCGCCAGTTTCCTGCAGCTGCAGAATGTTAAAGACGCCTGCTGCTCTTTCCTTCAGGAGAGGTTGCATCCAAAAAACTGCCTGGGTGTGCGCCAGTTCGCCGAGACCATGATGTGCACGACGCTGTATGATTCCGCCAACAGCTTCGTGCATCAGCACTTTGTGGAGGTTTCCATGTCTGAGGAGTTTCTGAGCCTGCGGCCTGACGAGGTGCTCGAGCTGGTGGGCTGTGATGAGCTCAACGTCAAGGCTGAGGAGCAGGTGTTCGAGGCCGTCCTTGCGTGGGTGAGGCATCAGAGGGAAGACCGCGAGTCCTGCCTGCCTGAGCTGCTTTCCAAGACCCGACTGCCCCTGTGCCGACCCCAGTTCCTGGCTGATCGAGTCCAACAGGACGAGCTGGTGCGCTGCTGCCACAAATGCAGGGATCTGGTAGATGAGGCAAAGGATTATCATCTAATGCCAGAGCGGCGGCCGCACCTTCCTGCCTATAAGACACGGCAAAGATGCTGCACGTCCATCGCCGGGTTAATCTACGCAGTCGGGGGTCTCAACAGTGCAGGTGACTCATTAAACGTCGTGGAAGTATTTGATCCAATTGGTAATTGTTGGGAACGCTGTCAGCAAATGAGCACGGCCCGGAGTCGAGTGGGCGTGGCTGTGGTCAACGGGCTACTGTATGCTATCGGGGGCTACGACGGCCAGTCTCGGCTCAGCACAGTCGAAGTCTACAACCCAGAAACAGACACGTGGAGTAAAGTCGCCAGCATGAACAGTCAACGCAGTGCAATGGGAACAGTGGTAGTCGATGGACACATATACGTCTGTGGTGGCTATGATGGCAAGTCCTCACTCAATTCAGTAGAGTGCTATTCTCCAGAAACTGACAGATGGACAATAGTAACAGAGATGAGCGCGAGTCGCAGTGCTGCAGGCGTGACGGTATTTGAAGGGAGAATTTATGTTTCAGGTGGCCACGATGGTCTGCAGATTTTCAACACGGTGGAGTATTACAACCAGCACACGGCACAGTGGCACCCCCTGTCCCCCATGCTGAACAAGAGGTGCAGGCACGGCGCAGCGGCTTTGGGCAGTCAGCTCTACGTAGTGGGCGGCTACGACGGCTCTGGTTTCCTGAGCAGTGCCGAGGTGTACAGCTCTGCAGCCGAGCAGTGGAGCCATCTGGTGGCCATGAACACACGGCGCAGTCGAGTCTCACTGGTAGCTAACTGCGGTCATCTGTACGCCGTCGGAGGCTACGACGGCCAGTCCAACCTCAGCTCGGTGGAGATGTACGACCCAGAGACCAACCGCTGGACGTTTATGGCGCCCATGGTGTGCCACGAAGGCGGCGTCGGGGTTGGCTGTATACCCCTGCAACCAGCTTAGCCAATAAATCCACGTTAACAAAGGATTTTTAAAACGTTGTTTTTCTAGGTGGCGAACTTCCATAACGCACTCGTGCAACTTGATGTCCTAGCGTATGTTTGCACTGAAGGGCTGTGCTGTTGTACGTGATGTTACAGAAAACctacacacagtgtacacacagtGCAGCTTTGACAGGGATGTGGAATAACGTCTTTATTCTGATCAGAGATTCaacggttaaaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K10455 KLHL18; kelch-like protein 18

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83023 lncRNA upstream 5731 24083606 ~ 24084218 (+) True G69966
TU82994 lncRNA upstream 80089 24008464 ~ 24009860 (+) False G69946
TU82993 lncRNA upstream 81286 24007703 ~ 24008663 (+) True G69946
TU82909 lncRNA upstream 146877 23940241 ~ 23943072 (+) True G69878
TU82898 lncRNA upstream 167253 23922117 ~ 23922696 (+) False G69870
TU83047 lncRNA downstream 33902 24138635 ~ 24138888 (+) True G69987
TU83213 lncRNA downstream 461512 24566245 ~ 24566613 (+) True G70129
TU83214 lncRNA downstream 462267 24567000 ~ 24567318 (+) True G70130
TU83218 lncRNA downstream 465915 24570648 ~ 24570850 (+) True G70134
TU83222 lncRNA downstream 469603 24574336 ~ 24574570 (+) True G70138
XM_034304069.1 mRNA upstream 65784 24021065 ~ 24024165 (+) True LOC113540619
XM_026936232.2 mRNA upstream 73206 24013856 ~ 24016743 (+) True LOC113540051
XM_034304162.1 mRNA upstream 439316 23648271 ~ 23650633 (+) True mycb
XM_026937348.2 mRNA upstream 439316 23648271 ~ 23650633 (+) False mycb
XM_026937124.2 mRNA upstream 448480 23614440 ~ 23641469 (+) True ankhb
XM_026936985.2 mRNA downstream 16820 24121553 ~ 24127236 (+) False zgc:136930
XM_034303446.1 mRNA downstream 16820 24121553 ~ 24127179 (+) True zgc:136930
XM_026937349.2 mRNA downstream 29943 24134676 ~ 24136808 (+) True ccr9a
XM_034303198.1 mRNA downstream 40349 24145082 ~ 24148968 (+) True LOC113540392
XM_026936855.2 mRNA downstream 40349 24145082 ~ 24148968 (+) False LOC113540392
TU82445 other upstream 769606 23318504 ~ 23320343 (+) True G69509
XR_004578017.1 other upstream 2327648 21754018 ~ 21762301 (+) False LOC113540377
TU83028 other downstream 4062 24108795 ~ 24109889 (+) True G69971
XR_003403979.2 other downstream 754293 24859026 ~ 24871263 (+) False kif2c
XR_003404013.2 other downstream 1603094 25707827 ~ 25881109 (+) False tnr
TU84209 other downstream 1793402 25898135 ~ 25901843 (+) False LOC113539772
TU84572 other downstream 2124031 26228764 ~ 26229191 (+) True G71385

Expression Profile