RNA id: TU83047


Basic Information

Item Value
RNA id TU83047
length 254
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G69987
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 24138635 ~ 24138888 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

actgttgTGTTTACTtaacacagctgtgtttttttgtttactgatagttgttcaagagtcccttgtttgtcctgaacagttaaactgcctgctgttcttcagaaaaattcttcaggtcccacaaattctttggttttccagcatttttgtgtatttgaaccctttccaacaatgactgtatgattttgagatccatcttttcacactgaggacaactgagggactcatatacaactattacagaaggttcaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83005 lncRNA upstream 32412 24028106 ~ 24106223 (+) False klhl18
TU83023 lncRNA upstream 54417 24083606 ~ 24084218 (+) True G69966
TU82994 lncRNA upstream 128775 24008464 ~ 24009860 (+) False G69946
TU82993 lncRNA upstream 129972 24007703 ~ 24008663 (+) True G69946
TU82909 lncRNA upstream 195563 23940241 ~ 23943072 (+) True G69878
TU83213 lncRNA downstream 427357 24566245 ~ 24566613 (+) True G70129
TU83214 lncRNA downstream 428112 24567000 ~ 24567318 (+) True G70130
TU83218 lncRNA downstream 431760 24570648 ~ 24570850 (+) True G70134
TU83222 lncRNA downstream 435448 24574336 ~ 24574570 (+) True G70138
TU83223 lncRNA downstream 444288 24583176 ~ 24583376 (+) True G70139
XM_026937349.2 mRNA upstream 1827 24134676 ~ 24136808 (+) True ccr9a
XM_026936985.2 mRNA upstream 11399 24121553 ~ 24127236 (+) False zgc:136930
XM_034303446.1 mRNA upstream 11456 24121553 ~ 24127179 (+) True zgc:136930
XM_026937230.2 mRNA upstream 33902 24089949 ~ 24104733 (+) True klhl18
XM_034304069.1 mRNA upstream 114470 24021065 ~ 24024165 (+) True LOC113540619
XM_034303198.1 mRNA downstream 6194 24145082 ~ 24148968 (+) True LOC113540392
XM_026936855.2 mRNA downstream 6194 24145082 ~ 24148968 (+) False LOC113540392
XM_034303200.1 mRNA downstream 6386 24145274 ~ 24148968 (+) False LOC113540392
XM_034303199.1 mRNA downstream 6391 24145279 ~ 24148968 (+) False LOC113540392
XM_034303197.1 mRNA downstream 22890 24161778 ~ 24170467 (+) True si:dkey-154p10.3
TU83028 other upstream 28746 24108795 ~ 24109889 (+) True G69971
TU82445 other upstream 818292 23318504 ~ 23320343 (+) True G69509
XR_004578017.1 other upstream 2376334 21754018 ~ 21762301 (+) False LOC113540377
XR_003403979.2 other downstream 720138 24859026 ~ 24871263 (+) False kif2c
XR_003404013.2 other downstream 1568939 25707827 ~ 25881109 (+) False tnr
TU84209 other downstream 1759247 25898135 ~ 25901843 (+) False LOC113539772
TU84572 other downstream 2089876 26228764 ~ 26229191 (+) True G71385
XR_003404061.2 other downstream 2149402 26288290 ~ 26292784 (+) True zgc:66427

Expression Profile