Item | Value |
---|---|
RNA id | XR_003404038.2 |
length | 360 |
lncRNA type | inter_gene |
GC content | 0.48 |
exon number | 2 |
gene id | LOC113540553 |
representative | False |
Item | Value |
---|---|
chromosome id | NC_047598.1 |
NCBI id | CM018544.1 |
chromosome length | 33267568 |
location | 24839221 ~ 24849487 (+) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
species | striped catfish (Pangasianodon hypophthalmus) |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TU83289 | lncRNA | upstream | 89308 | 24681981 ~ 24749913 (+) | True | G70204 |
TU83226 | lncRNA | upstream | 253314 | 24585427 ~ 24585907 (+) | True | G70142 |
TU83224 | lncRNA | upstream | 254382 | 24584614 ~ 24584839 (+) | True | G70140 |
TU83223 | lncRNA | upstream | 255845 | 24583176 ~ 24583376 (+) | True | G70139 |
TU83222 | lncRNA | upstream | 264651 | 24574336 ~ 24574570 (+) | True | G70138 |
TU83637 | lncRNA | downstream | 151195 | 24997916 ~ 24998225 (+) | True | G70520 |
XR_004578007.1 | lncRNA | downstream | 481497 | 25328218 ~ 25330540 (+) | True | LOC117597084 |
TU83828 | lncRNA | downstream | 710116 | 25556837 ~ 25557761 (+) | True | G70695 |
TU83897 | lncRNA | downstream | 711706 | 25558427 ~ 25561346 (+) | True | G70763 |
TU83912 | lncRNA | downstream | 738605 | 25585326 ~ 25585534 (+) | True | G70778 |
XM_026936109.2 | mRNA | upstream | 31817 | 24792295 ~ 24807404 (+) | True | kiss1ra |
XM_026936117.2 | mRNA | upstream | 242112 | 24587207 ~ 24597109 (+) | True | zgc:113531 |
XM_026936540.2 | mRNA | upstream | 277943 | 24507205 ~ 24561278 (+) | True | slc6a9 |
XM_026935923.2 | mRNA | downstream | 12305 | 24859026 ~ 24871164 (+) | True | kif2c |
XM_026935924.2 | mRNA | downstream | 12306 | 24859027 ~ 24871164 (+) | False | kif2c |
XM_026937276.2 | mRNA | downstream | 148156 | 24994877 ~ 25013306 (+) | True | klhl20 |
XM_026937138.2 | mRNA | downstream | 174892 | 25021613 ~ 25047317 (+) | True | dars2 |
XM_026936668.2 | mRNA | downstream | 423501 | 25270222 ~ 25552839 (+) | True | astn1 |
TU83028 | other | upstream | 729332 | 24108795 ~ 24109889 (+) | True | G69971 |
TU82445 | other | upstream | 1518878 | 23318504 ~ 23320343 (+) | True | G69509 |
XR_003404030.2 | other | upstream | 3076920 | 21754080 ~ 21762301 (+) | True | LOC113540377 |
XR_003403979.2 | other | downstream | 12305 | 24859026 ~ 24871263 (+) | False | kif2c |
XR_003404013.2 | other | downstream | 861106 | 25707827 ~ 25881109 (+) | False | tnr |
TU84209 | other | downstream | 1051414 | 25898135 ~ 25901843 (+) | False | LOC113539772 |
TU84572 | other | downstream | 1382043 | 26228764 ~ 26229191 (+) | True | G71385 |
XR_003404061.2 | other | downstream | 1441569 | 26288290 ~ 26292784 (+) | True | zgc:66427 |