RNA id: TU83912


Basic Information

Item Value
RNA id TU83912
length 209
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G70778
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 25585326 ~ 25585534 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAACATCCACAGTCTTCTTTAGGTTGtccatgtggtaccatccatAGCAACTTCATAGCAAACTTTTATTAAATTACACAGCAAGTAATTCTTTAGCAAATGATTGTCCAGCAATTAATAAACTAGCTTAGATTGTGTAGAAACAATTGCCCCTTTCATGTATCTTGTGTATATACTGCATTTAATAAAGAATACAATCAAAACAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83897 lncRNA upstream 23980 25558427 ~ 25561346 (+) True G70763
TU83828 lncRNA upstream 27565 25556837 ~ 25557761 (+) True G70695
XR_004578007.1 lncRNA upstream 254786 25328218 ~ 25330540 (+) True LOC117597084
TU83637 lncRNA upstream 587101 24997916 ~ 24998225 (+) True G70520
TU83566 lncRNA upstream 735839 24839247 ~ 24849487 (+) True LOC113540553
TU83914 lncRNA downstream 719 25586253 ~ 25586458 (+) True G70780
TU83916 lncRNA downstream 4433 25589967 ~ 25590187 (+) True G70782
TU83932 lncRNA downstream 27910 25613444 ~ 25613676 (+) True G70798
TU83942 lncRNA downstream 41179 25626713 ~ 25626937 (+) True G70808
TU83953 lncRNA downstream 67904 25653438 ~ 25690117 (+) True G70813
XM_026936668.2 mRNA upstream 32487 25270222 ~ 25552839 (+) True astn1
XM_026936709.2 mRNA downstream 57868 25643402 ~ 25664410 (+) True cop1
XM_026936708.2 mRNA downstream 57868 25643402 ~ 25664372 (+) False cop1
XM_026936640.2 mRNA downstream 122293 25707827 ~ 25881110 (+) True tnr
XM_034303945.1 mRNA downstream 122293 25707827 ~ 25881110 (+) False tnr
XM_034303944.1 mRNA downstream 159989 25745523 ~ 25881110 (+) False tnr
XR_003403979.2 other upstream 714063 24859026 ~ 24871263 (+) False kif2c
TU83028 other upstream 1475437 24108795 ~ 24109889 (+) True G69971
TU82445 other upstream 2264983 23318504 ~ 23320343 (+) True G69509
XR_004578016.1 other upstream 3823025 21756781 ~ 21762301 (+) False LOC113540377
XR_003404013.2 other downstream 122293 25707827 ~ 25881109 (+) False tnr
TU84209 other downstream 312601 25898135 ~ 25901843 (+) False LOC113539772
TU84572 other downstream 643230 26228764 ~ 26229191 (+) True G71385
XR_003404061.2 other downstream 702756 26288290 ~ 26292784 (+) True zgc:66427
XR_003404062.2 other downstream 702756 26288290 ~ 26292784 (+) False zgc:66427

Expression Profile