RNA id: TU84208


Basic Information

Item Value
RNA id TU84208
length 1667
lncRNA type sense_over
GC content 0.38
exon number 3
gene id LOC113539772
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 25897017 ~ 25902006 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTGCAAGGCAAAGGAGCTTGTGAGACACAGGAGTCTTTCTTCCACTCTAGGCCTCCACATAGCAAAAGGAAGGCACAGGACATAACTTAAGCAGTATTCAGATGAACATGTGGATAAAGTACAAACCTTGCATGGTGTCAGCATCAGGCAGGATCTGAGGAGGGTTGTATGATGGGAGGGAAAACATCTGGACCTTGTGTGTACAAAGATGAAATGTCCGAATTCTATCACTTCTTGGAGAGTCAAAGCAGAAGGGACTAATCTGCAGGTGGAAGCTTGATTTTGCATCATTCATATCAGAATCTTCTGTGATTTCAAAGGGTCGAGCAGCACTAATTCCACAGCTGGACATCCCTCATTCAATAATGCTGAAATTAACTAATTAGAAGAGcctacaagaaagaaaaaagattgcCCTTTCTATGGTGAACAAAGCTGAGATCTTATAGAAATCCAGAAGAAGTGGTATAAACATCTGCCCATTTACTACAAAGGATATTTCTGGTTTGATCTCCATATGACCTCCTGAGAGCCAAGGCTCTTGTTGAACCATGAAGGAGCAGATTGCTGAATTCTTCAATGCTTTTTGGATGCTTATGATCACCAAACACAATGAGGGCATTtacaacacagtgtgtgttgttgtgctCCTTTTGCTGCCTCTACTTGTTTTCTTCACTTCCCTGGTTGTTTGCTGTCACTGCTGCTCATCACTTTGCAGAGGATGCCACTGTTGCTGTTGTAGAGATTCTGCCACACTGACAGGGACACAggttgaaaagaaaaagaaaaaaaggaagaatggTGGCCAGAATGAGGAGGACTTGTGGATTTCAGTCAAAACAGACCCCATGCCTCCAGATAGACTGGCCCTTACCATTGTGTAGTTGGGTCATGATCTGTTTTGAAATACGGCTTGGATATTTATATATGCCTAGCTCATACATAAGTTACATTACTTACTAGTATGTCAAGCTAACTGGATGTATTATAATATTGAAGACTGGAATGAGTTTAGTCATCGTGACTAAGAACTACTAGACATTTAGAATTCCTTTCCTAGATTAACTTAATTTTATGAAACTTCATTTAAACAAGCAAGGATTAtgtgaaatggataaaaaggtaCAAAACTAATCCTTTGCTTAACCCTAAACTTTGCTGCAAACTAAGATAATTGTTTGTGCAATAGAGGTGGATTCCCCTTTCGTATTTCTAAATACAACACTGCTGACAGTGCAAAGAGGAAAGAACTTCCTGGATGTTCACATAAGGCACTTGTGTTAAGCAATAACACCTCTGTAAGAAATAAAGGCCTGTAAAAATGCAAAGATGTTTTAACACCTTTTgtcaaattcattttcattactgTGAAAGAATAAGAATAGTGATTTTACCGCACAAATGTTTTTGCTCTGCCATTCAGTGTAGCCTATAATTTGTGATTAAATTGGCTTGTTTTCCAATGAGACAACCTAGAGTTGAAATCATGACACATACGAATAATGGTAGAGAAGGTACATTTTGAATTTATGGGCCAACAATGAGGGAAAGCAGTTGAATTAGCATGAGCATGTTAATTTCAGGTGTGTGATAATGAATTTACTTATGCAGCatgttttttgctttctctATACTGTTGATGTATGGAAATTAATACAGTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83953 lncRNA upstream 208018 25653438 ~ 25690117 (+) True G70813
TU83942 lncRNA upstream 271198 25626713 ~ 25626937 (+) True G70808
TU83932 lncRNA upstream 284459 25613444 ~ 25613676 (+) True G70798
TU83916 lncRNA upstream 307948 25589967 ~ 25590187 (+) True G70782
TU83914 lncRNA upstream 311677 25586253 ~ 25586458 (+) True G70780
TU84331 lncRNA downstream 21993 25923952 ~ 25928740 (+) True G71163
TU84503 lncRNA downstream 137223 26039182 ~ 26039383 (+) True G71322
TU84510 lncRNA downstream 226660 26128619 ~ 26128826 (+) True G71329
TU84555 lncRNA downstream 303599 26205558 ~ 26205786 (+) True G71373
TU84556 lncRNA downstream 306361 26208320 ~ 26208544 (+) True G71374
XM_026936640.2 mRNA upstream 17025 25707827 ~ 25881110 (+) True tnr
XM_034303945.1 mRNA upstream 17025 25707827 ~ 25881110 (+) False tnr
XM_034303944.1 mRNA upstream 17025 25745523 ~ 25881110 (+) False tnr
XM_026936641.2 mRNA upstream 17025 25784929 ~ 25881110 (+) False tnr
XM_026936643.2 mRNA upstream 17026 25822096 ~ 25881109 (+) False tnr
XM_026936184.2 mRNA downstream 49195 25951154 ~ 25953899 (+) True mrps14
XM_026935822.2 mRNA downstream 52997 25954956 ~ 25964158 (+) False cacybp
XM_026935821.2 mRNA downstream 53020 25954979 ~ 25964158 (+) True cacybp
XM_026936904.2 mRNA downstream 71922 25973881 ~ 25979456 (+) True plk3
XM_026936905.2 mRNA downstream 71922 25973881 ~ 25979456 (+) False plk3
XR_003404013.2 other upstream 17026 25707827 ~ 25881109 (+) False tnr
XR_003403979.2 other upstream 1026872 24859026 ~ 24871263 (+) False kif2c
TU83028 other upstream 1788246 24108795 ~ 24109889 (+) True G69971
TU82445 other upstream 2577792 23318504 ~ 23320343 (+) True G69509
XR_004578016.1 other upstream 4135834 21756781 ~ 21762301 (+) False LOC113540377
TU84572 other downstream 326805 26228764 ~ 26229191 (+) True G71385
XR_003404061.2 other downstream 386331 26288290 ~ 26292784 (+) True zgc:66427
XR_003404062.2 other downstream 386331 26288290 ~ 26292784 (+) False zgc:66427
XR_004578101.1 other downstream 386333 26288292 ~ 26292784 (+) False zgc:66427
XR_003404060.2 other downstream 386335 26288294 ~ 26292784 (+) False zgc:66427

Expression Profile