RNA id: TU84555


Basic Information

Item Value
RNA id TU84555
length 229
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G71373
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26205558 ~ 26205786 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtttagcttctttttttaaattcggtgatgtgtgttcagcagtgaagaaggggaggaggtgtgaAGCTGGACGTGTTGAAGCAATAACTGACTTGTAACTTTTCAACTATAAATTTTGATGGACAAGTATAACCCCACTGACacttattgtattgttttaaagccaaaagtttATCAAGTtgaaaatatttgcacattGTATGGATTcatgttgatgccaaattctgag

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0015103 inorganic anion transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84510 lncRNA upstream 76732 26128619 ~ 26128826 (+) True G71329
TU84503 lncRNA upstream 166175 26039182 ~ 26039383 (+) True G71322
TU84331 lncRNA upstream 276818 25923952 ~ 25928740 (+) True G71163
TU84210 lncRNA upstream 303642 25898135 ~ 25901916 (+) False LOC113539772
TU84556 lncRNA downstream 2534 26208320 ~ 26208544 (+) True G71374
TU84559 lncRNA downstream 12340 26218126 ~ 26223996 (+) False LOC117597118
TU84565 lncRNA downstream 19126 26224912 ~ 26226337 (+) True G71381
TU84566 lncRNA downstream 19126 26224912 ~ 26226337 (+) False G71381
TU84567 lncRNA downstream 19126 26224912 ~ 26226337 (+) False G71381
XM_034303950.1 mRNA upstream 81412 26056924 ~ 26124146 (+) False rasal2
XM_034303951.1 mRNA upstream 81412 26056924 ~ 26124146 (+) False rasal2
XM_034303956.1 mRNA upstream 81412 26073043 ~ 26124146 (+) False rasal2
XM_034303952.1 mRNA upstream 82992 26056924 ~ 26122566 (+) False rasal2
XM_034303954.1 mRNA upstream 88057 26056923 ~ 26117501 (+) False rasal2
XM_034303850.1 mRNA downstream 10278 26216064 ~ 26224038 (+) True LOC117597118
XM_026937232.2 mRNA downstream 82507 26288293 ~ 26292784 (+) False zgc:66427
XM_026935880.2 mRNA downstream 108557 26314343 ~ 26318878 (+) True si:ch211-284o19.8
XM_034303638.1 mRNA downstream 122141 26327927 ~ 26338595 (+) False mettl17
XM_026935878.2 mRNA downstream 122508 26328294 ~ 26338595 (+) True mettl17
TU84209 other upstream 303715 25898135 ~ 25901843 (+) False LOC113539772
XR_003404013.2 other upstream 324449 25707827 ~ 25881109 (+) False tnr
XR_003403979.2 other upstream 1334295 24859026 ~ 24871263 (+) False kif2c
TU83028 other upstream 2095669 24108795 ~ 24109889 (+) True G69971
TU82445 other upstream 2885215 23318504 ~ 23320343 (+) True G69509
TU84572 other downstream 22978 26228764 ~ 26229191 (+) True G71385
XR_003404061.2 other downstream 82504 26288290 ~ 26292784 (+) True zgc:66427
XR_003404062.2 other downstream 82504 26288290 ~ 26292784 (+) False zgc:66427
XR_004578101.1 other downstream 82506 26288292 ~ 26292784 (+) False zgc:66427
XR_003404060.2 other downstream 82508 26288294 ~ 26292784 (+) False zgc:66427

Expression Profile