RNA id: TU84556


Basic Information

Item Value
RNA id TU84556
length 225
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G71374
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26208320 ~ 26208544 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGAATGTTACAGTGTGACAGTCTGTTGGTTTTATGTCCCAGTGCTAAGATGAtcacactttaataataatatttgctaCATGTTTGGTTACTTTGTGcagtaaagcaaaataaagacattaatgAGCAGAATAGTGACTTTTGTGTTTCTTACAGGTGGTAGTTTAGATTTCCTGAATAAGAATGAATCTTGTGAGTTTGGTGTGTCTACAGTGTGCTGTTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84555 lncRNA upstream 2534 26205558 ~ 26205786 (+) True G71373
TU84510 lncRNA upstream 79494 26128619 ~ 26128826 (+) True G71329
TU84503 lncRNA upstream 168937 26039182 ~ 26039383 (+) True G71322
TU84331 lncRNA upstream 279580 25923952 ~ 25928740 (+) True G71163
TU84212 lncRNA upstream 306404 25898135 ~ 25901916 (+) False LOC113539772
TU84559 lncRNA downstream 9582 26218126 ~ 26223996 (+) False LOC117597118
TU84565 lncRNA downstream 16368 26224912 ~ 26226337 (+) True G71381
TU84566 lncRNA downstream 16368 26224912 ~ 26226337 (+) False G71381
TU84567 lncRNA downstream 16368 26224912 ~ 26226337 (+) False G71381
XR_004578086.1 lncRNA downstream 16374 26224918 ~ 26225364 (+) True LOC117597183
XM_034303950.1 mRNA upstream 84174 26056924 ~ 26124146 (+) False rasal2
XM_034303951.1 mRNA upstream 84174 26056924 ~ 26124146 (+) False rasal2
XM_034303956.1 mRNA upstream 84174 26073043 ~ 26124146 (+) False rasal2
XM_034303952.1 mRNA upstream 85754 26056924 ~ 26122566 (+) False rasal2
XM_034303954.1 mRNA upstream 90819 26056923 ~ 26117501 (+) False rasal2
XM_034303850.1 mRNA downstream 7520 26216064 ~ 26224038 (+) True LOC117597118
XM_026937232.2 mRNA downstream 79749 26288293 ~ 26292784 (+) False zgc:66427
XM_026935880.2 mRNA downstream 105799 26314343 ~ 26318878 (+) True si:ch211-284o19.8
XM_034303638.1 mRNA downstream 119383 26327927 ~ 26338595 (+) False mettl17
XM_026935878.2 mRNA downstream 119750 26328294 ~ 26338595 (+) True mettl17
TU84209 other upstream 306477 25898135 ~ 25901843 (+) False LOC113539772
XR_003404013.2 other upstream 327211 25707827 ~ 25881109 (+) False tnr
XR_003403979.2 other upstream 1337057 24859026 ~ 24871263 (+) False kif2c
TU83028 other upstream 2098431 24108795 ~ 24109889 (+) True G69971
TU82445 other upstream 2887977 23318504 ~ 23320343 (+) True G69509
TU84572 other downstream 20220 26228764 ~ 26229191 (+) True G71385
XR_003404061.2 other downstream 79746 26288290 ~ 26292784 (+) True zgc:66427
XR_003404062.2 other downstream 79746 26288290 ~ 26292784 (+) False zgc:66427
XR_004578101.1 other downstream 79748 26288292 ~ 26292784 (+) False zgc:66427
XR_003404060.2 other downstream 79750 26288294 ~ 26292784 (+) False zgc:66427

Expression Profile