RNA id: TU84608



Basic Information


Item Value
RNA id TU84608
length 228
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G71408
representative True

Chromosome Information


Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26294755 ~ 26294982 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


TTTGAGTTGGGCAGCCCGATAGTAAAACTGAAAATTGGGCAGCGAAAGACCCCCTAGATCTTTTGGTTTACAAAGTTTAGAAAGACCAACTCTCTGATGCTTATTATTCCAGATATAACGAGATATGAGAGAATTCGGAGATTTAAAGAAGGATGTATTTAAATAACACGGAAGATTTTGAAACAGATAGTTTAAATGGGGaagaatattcatttttataatgttgaC

Function


GO: NA

KEGG: NA

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
XR_004578087.1 lncRNA upstream 68340 26225431 ~ 26226415 (+) True LOC117597184
TU84565 lncRNA upstream 68418 26224912 ~ 26226337 (+) True G71381
TU84566 lncRNA upstream 68418 26224912 ~ 26226337 (+) False G71381
TU84567 lncRNA upstream 68418 26224912 ~ 26226337 (+) False G71381
XR_004578086.1 lncRNA upstream 69391 26224918 ~ 26225364 (+) True LOC117597183
TU84695 lncRNA downstream 169029 26464011 ~ 26464314 (+) True G71482
TU84702 lncRNA downstream 177593 26472575 ~ 26551026 (+) True G71485
TU84751 lncRNA downstream 372780 26667762 ~ 26668128 (+) True G71519
TU84789 lncRNA downstream 489590 26784572 ~ 26786560 (+) True G71550
TU84796 lncRNA downstream 513075 26808057 ~ 26856605 (+) True G71557
XM_026937232.2 mRNA upstream 1971 26288293 ~ 26292784 (+) False zgc:66427
XM_034303850.1 mRNA upstream 70717 26216064 ~ 26224038 (+) True LOC117597118
XM_034303950.1 mRNA upstream 170609 26056924 ~ 26124146 (+) False rasal2
XM_026935880.2 mRNA downstream 19361 26314343 ~ 26318878 (+) True si:ch211-284o19.8
XM_034303638.1 mRNA downstream 32945 26327927 ~ 26338595 (+) False mettl17
XM_026935878.2 mRNA downstream 33312 26328294 ~ 26338595 (+) True mettl17
XM_034303637.1 mRNA downstream 33719 26328701 ~ 26338595 (+) False mettl17
XM_034303636.1 mRNA downstream 33720 26328702 ~ 26338595 (+) False mettl17
XR_003404061.2 other upstream 1971 26288290 ~ 26292784 (+) True zgc:66427
XR_003404062.2 other upstream 1971 26288290 ~ 26292784 (+) False zgc:66427
XR_004578101.1 other upstream 1971 26288292 ~ 26292784 (+) False zgc:66427
XR_003404060.2 other upstream 1971 26288294 ~ 26292784 (+) False zgc:66427
TU84572 other upstream 65564 26228764 ~ 26229191 (+) True G71385
TU84616 other downstream 58207 26353189 ~ 26375779 (+) True LOC117597079
TU84618 other downstream 58207 26353189 ~ 26364233 (+) False LOC117597079
XR_003404105.1 other downstream 368989 26663971 ~ 26664082 (+) True LOC113540735
XR_003404108.2 other downstream 818166 27113148 ~ 27113254 (+) True LOC113540738
trnat-ugu_5 other downstream 1194271 27489253 ~ 27489325 (+) True trnat-ugu_5

Expression Profile


TU84608 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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TU84608 Expression in each Bioproject

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TU84608 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.