RNA id: XM_034303639.1


Basic Information

Item Value
RNA id XM_034303639.1
length 1556
RNA type mRNA
GC content 0.47
exon number 6
gene id ltb4r2b
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26371921 ~ 26376408 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atgtgaatgtaattTTTAAGGGAATGTGAAAACACTATGAGTTCAGGTAGTTCATCTGCTGATGATTAAACACTCaataaaacaactaaaaataaaaagggatcaaaataaagagagaataaaattcCAATAAAAATGCCGTGACAATGGAGAAAGAGCATGGAGGACTGACTGActaatacctctctctctctctctctctcagcatgtTGTGGCCTGTGTGAtggaaatattttctctttatatAAGAACAAGAAGACAAACTGAAGACACACTGGAGGGAACAGattagagagacagaggaggagacatttaaacagacagatatacagaaagagagagagagaaactaaaGACAGctaaagagagagaagatgacAATGTGAGACAGTATCATTCCTGAAACAGAGATTTAATCCTTGTGTTCCTATGAGGAAACTTCACTGCTCCACATCAGCATCTCTAATGACTGTGGAAAATATCACAAGCTCTTTCTCCCCTGACAAAACACCATCAGACCCCACAGTCTCATTTGCTATTGGCGCCTTCATCCTTGCCATTGTCTTCCTCCTGGGCGTCCCAGGAAACCTCTTCATCATATGGAGCATCCTGGTGCGTTCTCGTAAGCGCTCAGTCACCACGCTGATCATCCTGAACCTGGTGTGTGCCGATGGTGCCATCATGTGCCTCACCGTGTTCTTCATTGTGTACCTGGCCAAGCAGTCGTGGGTGTTTGGACGCTCCATGTGCAAGCTGCTCTTCTACTTGTGCAACACCAACATGTATGCCTCCATCATGCTCATCACACTCATGAGTGTGCACCGGCTGGTCACCGTGCTCGACCGTGCTTACGTCTTCACGCGGAGGAGAAACATACTGAGCATCCTCGCCATGCTCTGGGTGCTCGTCTTTACGCTTGCCATCCCTGCTCTGATATTCAGGGATGAGAAAGAGGAGCACACCAATCAATTGCTGTGCTCATACAATCACACAAATCCCAAATATGAGGTGTTTCACCTGAGCATGGAGACAGTGGTGGGGTTCCTGCTCCCGTATGGAATCATCGTCAGCAGTTACGTGTGTATTCTCCGCGATCTGCAACAGACACGATTTAGGAGGCGAGTGCGTAGTGAGAAGCTCATCCTAGCCATCATTGTCACCTTCGCTGCCTTCTGGCTGCCATATCATATCATCAACATTGTGCAGGTGGTGTCTGCATGTGCACCAGAGCATTCTAAACtacaaaaaatGTTGGACAGCATCTCAAGCTCATGTCGAGCTGCCACCTCCTCCCTGGCCTTCATTAGCAGCTGTGCTAACCCGGTACTGTACGCTCTAGCAGGGCGCCCCTACATCCATGCAGACGGACTGTCCTTCATGGCCCGGCTGTTTGAGGGCACAGCGCTTGAGATCGGCAATGGAACACTCCGAATTCACCGCAAAGTGAGCAGAGCAGGACCGGCAGTGCTCTCACTGAAGAACTGCGACTCTTGTGCAAACAATGCAGACCAAAGCTAACAGACTGATATCTGAGTATTACACAAAGATGTCCTtta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84635 lncRNA downstream 82005 26260689 ~ 26289916 (-) True LOC117597203
XR_004578102.1 lncRNA downstream 83710 26260721 ~ 26288211 (-) False LOC117597203
TU84576 lncRNA downstream 142730 26228879 ~ 26229191 (-) True G71386
TU84558 lncRNA downstream 160239 26211443 ~ 26211682 (-) True G71376
TU84552 lncRNA downstream 215070 26156163 ~ 26156851 (-) True G71370
TU84679 lncRNA upstream 26131 26402539 ~ 26412348 (-) True G71469
TU84680 lncRNA upstream 31567 26407975 ~ 26415752 (-) True G71470
TU84681 lncRNA upstream 32767 26409175 ~ 26414494 (-) True G71471
TU84686 lncRNA upstream 49850 26426258 ~ 26427374 (-) True G71474
TU84840 lncRNA upstream 87622 26464030 ~ 26464318 (-) True G71589
XM_026935881.2 mRNA downstream 3946 26338735 ~ 26367975 (-) True sdr39u1
XM_034303641.1 mRNA downstream 3972 26338735 ~ 26367949 (-) False sdr39u1
XM_034303640.1 mRNA downstream 4794 26338735 ~ 26367127 (-) False sdr39u1
XM_034303642.1 mRNA downstream 5585 26338735 ~ 26366336 (-) False sdr39u1
XM_026935873.2 mRNA downstream 42646 26319287 ~ 26329275 (-) True parp2
XM_026935883.2 mRNA upstream 70050 26446458 ~ 26452831 (-) True si:dkeyp-66d1.7
XM_026935989.2 mRNA upstream 202386 26578794 ~ 26595990 (-) False sppl2
XM_026935988.2 mRNA upstream 202387 26578795 ~ 26595990 (-) True sppl2
XM_026936649.2 mRNA upstream 296339 26672747 ~ 26678848 (-) True ccnl1b
XM_026936093.2 mRNA upstream 331674 26708082 ~ 26712304 (-) True slitrk3b
TU83344 other downstream 2066995 24304374 ~ 24304926 (-) True G70255
XR_003404116.1 other downstream 2335067 24036718 ~ 24036854 (-) True LOC113540746
LOC117597117 other downstream 2839905 23531238 ~ 23532016 (-) True LOC117597117
LOC113540013 other downstream 2854251 23516930 ~ 23517670 (-) True LOC113540013
LOC113540114 other downstream 2855562 23515699 ~ 23516359 (-) True LOC113540114
TU84853 other upstream 95672 26472080 ~ 26551030 (-) False G71596
TU84852 other upstream 160694 26537102 ~ 26551030 (-) False G71596
TU85159 other upstream 720194 27096602 ~ 27100858 (-) True G71832
TU85245 other upstream 827375 27203783 ~ 27204186 (-) True G71909
trnat-ugu_3 other upstream 1018949 27395357 ~ 27395429 (-) True trnat-ugu_3

Expression Profile