RNA id: TU84680


Basic Information

Item Value
RNA id TU84680
length 232
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G71470
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26407975 ~ 26415752 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atttaaagcagtgtgtgtgtgtgtgtgtttaaaacactcactgggcaggtatttaaagcaatgtttgtgtgtgtgtctgtgtgtgtgtgtgtgtgtaaaacactcagtgGGCAGGcatttaaagctgtgtgtgtgcaaaacacTCAGTCGGctggtatttaaagcagtgtgtgtgtgtctgtgtgtggttgcatggaaaaataaaaaatcactggGCAGGTACTTaaagcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84665 lncRNA downstream 25453 26368686 ~ 26382522 (-) True G71456
TU84635 lncRNA downstream 118059 26260689 ~ 26289916 (-) True LOC117597203
XR_004578102.1 lncRNA downstream 119764 26260721 ~ 26288211 (-) False LOC117597203
TU84576 lncRNA downstream 178784 26228879 ~ 26229191 (-) True G71386
TU84558 lncRNA downstream 196293 26211443 ~ 26211682 (-) True G71376
TU84686 lncRNA upstream 10506 26426258 ~ 26427374 (-) True G71474
TU84840 lncRNA upstream 48278 26464030 ~ 26464318 (-) True G71589
XR_004577960.1 lncRNA upstream 81281 26497033 ~ 26499267 (-) False LOC113540239
XR_003404010.2 lncRNA upstream 81281 26497033 ~ 26499267 (-) True LOC113540239
TU84851 lncRNA upstream 134342 26550094 ~ 26551030 (-) True G71596
XM_034303639.1 mRNA downstream 31567 26371921 ~ 26376408 (-) True ltb4r2b
XM_026935881.2 mRNA downstream 40000 26338735 ~ 26367975 (-) True sdr39u1
XM_026935883.2 mRNA upstream 30706 26446458 ~ 26452831 (-) True si:dkeyp-66d1.7
XM_026935989.2 mRNA upstream 163042 26578794 ~ 26595990 (-) False sppl2
XM_026935988.2 mRNA upstream 163043 26578795 ~ 26595990 (-) True sppl2
XM_026936649.2 mRNA upstream 256995 26672747 ~ 26678848 (-) True ccnl1b
XM_026936093.2 mRNA upstream 292330 26708082 ~ 26712304 (-) True slitrk3b
TU84653 other downstream 31887 26373758 ~ 26376088 (-) False ltb4r2b
TU83344 other downstream 2103049 24304374 ~ 24304926 (-) True G70255
XR_003404116.1 other downstream 2371121 24036718 ~ 24036854 (-) True LOC113540746
LOC117597117 other downstream 2875959 23531238 ~ 23532016 (-) True LOC117597117
LOC113540013 other downstream 2890305 23516930 ~ 23517670 (-) True LOC113540013
TU84853 other upstream 56328 26472080 ~ 26551030 (-) False G71596
TU84852 other upstream 121350 26537102 ~ 26551030 (-) False G71596
TU85159 other upstream 680850 27096602 ~ 27100858 (-) True G71832
TU85245 other upstream 788031 27203783 ~ 27204186 (-) True G71909
trnat-ugu_3 other upstream 979605 27395357 ~ 27395429 (-) True trnat-ugu_3

Expression Profile