RNA id: TU84686


Basic Information

Item Value
RNA id TU84686
length 223
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G71474
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26426258 ~ 26427374 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctgggcaagtatttaaagcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaatcactcaatgagcaggtatttaaagctatgtgtgggtgtctgtgtgtttgcgtgtaaaacactcactggacaggtacttaaagcagtgtgtgtgtatgtgtgtgtgtaaaacacccaatgggcaggtatttaaagcaacgtgtgtgtgtgtgtgtttgcgtttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84680 lncRNA downstream 10506 26407975 ~ 26415752 (-) True G71470
TU84681 lncRNA downstream 11764 26409175 ~ 26414494 (-) True G71471
TU84679 lncRNA downstream 13910 26402539 ~ 26412348 (-) True G71469
TU84665 lncRNA downstream 43736 26368686 ~ 26382522 (-) True G71456
TU84635 lncRNA downstream 136342 26260689 ~ 26289916 (-) True LOC117597203
TU84840 lncRNA upstream 36656 26464030 ~ 26464318 (-) True G71589
XR_004577960.1 lncRNA upstream 69659 26497033 ~ 26499267 (-) False LOC113540239
XR_003404010.2 lncRNA upstream 69659 26497033 ~ 26499267 (-) True LOC113540239
TU84851 lncRNA upstream 122720 26550094 ~ 26551030 (-) True G71596
TU84896 lncRNA upstream 130855 26558229 ~ 26559138 (-) True G71636
XM_034303639.1 mRNA downstream 49850 26371921 ~ 26376408 (-) True ltb4r2b
XM_026935881.2 mRNA downstream 58283 26338735 ~ 26367975 (-) True sdr39u1
XM_026935883.2 mRNA upstream 19084 26446458 ~ 26452831 (-) True si:dkeyp-66d1.7
XM_026935989.2 mRNA upstream 151420 26578794 ~ 26595990 (-) False sppl2
XM_026935988.2 mRNA upstream 151421 26578795 ~ 26595990 (-) True sppl2
XM_026936649.2 mRNA upstream 245373 26672747 ~ 26678848 (-) True ccnl1b
XM_026936093.2 mRNA upstream 280708 26708082 ~ 26712304 (-) True slitrk3b
TU84653 other downstream 50170 26373758 ~ 26376088 (-) False ltb4r2b
TU83344 other downstream 2121332 24304374 ~ 24304926 (-) True G70255
XR_003404116.1 other downstream 2389404 24036718 ~ 24036854 (-) True LOC113540746
LOC117597117 other downstream 2894242 23531238 ~ 23532016 (-) True LOC117597117
LOC113540013 other downstream 2908588 23516930 ~ 23517670 (-) True LOC113540013
TU84853 other upstream 44706 26472080 ~ 26551030 (-) False G71596
TU84852 other upstream 109728 26537102 ~ 26551030 (-) False G71596
TU85159 other upstream 669228 27096602 ~ 27100858 (-) True G71832
TU85245 other upstream 776409 27203783 ~ 27204186 (-) True G71909
trnat-ugu_3 other upstream 967983 27395357 ~ 27395429 (-) True trnat-ugu_3

Expression Profile