RNA id: TU84702


Basic Information

Item Value
RNA id TU84702
length 963
lncRNA type read_through
GC content 0.36
exon number 3
gene id G71485
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26472575 ~ 26551026 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tatatatatatatatatatatatatttatatatatatatatatatatatatatatatacgtgtatgttttttcttgtctttcctTCTTGTTTGGCCTTtctttattcctctctctctctctctctctctctctctctccctgttcaGTATTGTTGTCCACACAGATGATGGATAGATGTGTGTagaatgtatttatgtttttctgtattaTCTCTGTGTTAAAGCTGAAGGACACTATACAACTGTATCACTaaattgtgcacacacacacacgttcctaCTGACCTCAGAGCCTTGCCATTACATTGTTAAATGGGAGTGTGTCTTGATGCTATGAGGCATTACCATGACAACAGCTGAGAGAAGATTTTACTATTCAAAGCCGAATCCTTCAGTGCTCACATGCCTCAGACGACAGATTAGCGAGTGTAGCTGCTCAGAGTTAGCTCACttaatgttagcattagcaacatATTCAGTTTGTAGTCACTGCCAGTTAAGTGGTTGTTTATATCTCAGACCCCTGATTCACAGTTTtgagtttatttacatttttaatgacagtAACATAAGCCTGTGCTGTTTTGagttgttgtcatggtgacaAAGCTCTGACGTCTCTagattaaaggaacagttcagcCAAAATTGAAATGTACAGAATCTTAagctatggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgagaacaGACAGATCTGACCAGTAGGTGCTGctttgataaatattttattgggtTATGGATGAGATGCACCTTTTGCatctttaatcttttattattattattattattattattattattgttgttctcTTTTTCTAATACTGAAATCATACTAATCTTCCTCTTGCCCAAGTGTTGTAGACGCCTGAGCTTCCAGGTGTTAATACGTTTCTGCTGTTAATAAAAGCAACGAGGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84695 lncRNA upstream 8261 26464011 ~ 26464314 (+) True G71482
TU84608 lncRNA upstream 177593 26294755 ~ 26294982 (+) True G71408
XR_004578087.1 lncRNA upstream 246160 26225431 ~ 26226415 (+) True LOC117597184
TU84566 lncRNA upstream 246238 26224912 ~ 26226337 (+) False G71381
TU84751 lncRNA downstream 116736 26667762 ~ 26668128 (+) True G71519
TU84789 lncRNA downstream 233546 26784572 ~ 26786560 (+) True G71550
TU84796 lncRNA downstream 257031 26808057 ~ 26856605 (+) True G71557
TU84807 lncRNA downstream 321650 26872676 ~ 26881469 (+) True gng7
TU85145 lncRNA downstream 491677 27042703 ~ 27042912 (+) True G71819
XM_026935870.2 mRNA upstream 28197 26384917 ~ 26444378 (+) True nfatc4
XM_034303643.1 mRNA upstream 96749 26373975 ~ 26375826 (+) False LOC117597079
XM_034303637.1 mRNA upstream 133980 26328701 ~ 26338595 (+) False mettl17
XM_034303985.1 mRNA downstream 7177 26558203 ~ 26578423 (+) False arhgef18a
XM_026936656.2 mRNA downstream 7178 26558204 ~ 26578423 (+) True arhgef18a
XM_026936655.2 mRNA downstream 7178 26558204 ~ 26578423 (+) False arhgef18a
XM_026936657.2 mRNA downstream 7178 26558204 ~ 26578423 (+) False arhgef18a
XM_026936658.2 mRNA downstream 7178 26558204 ~ 26578423 (+) False arhgef18a
TU84616 other upstream 96796 26353189 ~ 26375779 (+) True LOC117597079
TU84618 other upstream 108342 26353189 ~ 26364233 (+) False LOC117597079
XR_003404061.2 other upstream 179791 26288290 ~ 26292784 (+) True zgc:66427
XR_003404105.1 other downstream 112945 26663971 ~ 26664082 (+) True LOC113540735
XR_003404108.2 other downstream 562122 27113148 ~ 27113254 (+) True LOC113540738
trnat-ugu_5 other downstream 938227 27489253 ~ 27489325 (+) True trnat-ugu_5
XR_003404069.1 other downstream 1005491 27556517 ~ 27556648 (+) True LOC113540695
XR_003404070.2 other downstream 1006739 27557765 ~ 27557902 (+) True LOC113540696

Expression Profile