RNA id: TU84751



Basic Information


Item Value
RNA id TU84751
length 367
lncRNA type intronic
GC content 0.35
exon number 1
gene id G71519
representative True

Chromosome Information


Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26667762 ~ 26668128 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


tgattattatagtgtgtgtgattgtagtgagtgtgttattATATTGAGCGTGTGATAGtactgagtgtgtgattatagtgagtagGTGATTATTATAGTGAGTGTATGattgaagtgagtgtgtgattgtagtgagtgtgtcattgtagtgagtgtgtgattatagtgagtgtgtgattatagtgagtatGTGATTATAACAGTGAGTATGATTATAATAGTGTGTATagcaagtgtgtgattattatagtgtgtgtatgatttttaAGGCGTGCATGTGATTATTACAGCAAGCGTGTGATTATTGCAGCGAGCATGTTATTATtacagcgagtgtgtgattattatagtgtgtgtgattgtagtg

Function


GO: NA

KEGG: NA

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU84702 lncRNA upstream 116736 26472575 ~ 26551026 (+) True G71485
TU84695 lncRNA upstream 203448 26464011 ~ 26464314 (+) True G71482
TU84608 lncRNA upstream 372780 26294755 ~ 26294982 (+) True G71408
XR_004578087.1 lncRNA upstream 441347 26225431 ~ 26226415 (+) True LOC117597184
TU84567 lncRNA upstream 441425 26224912 ~ 26226337 (+) False G71381
TU84789 lncRNA downstream 116444 26784572 ~ 26786560 (+) True G71550
TU84796 lncRNA downstream 139929 26808057 ~ 26856605 (+) True G71557
TU84807 lncRNA downstream 204548 26872676 ~ 26881469 (+) True gng7
TU85145 lncRNA downstream 374575 27042703 ~ 27042912 (+) True G71819
TU85154 lncRNA downstream 405713 27073841 ~ 27074076 (+) True G71827
XM_026936646.2 mRNA upstream 4047 26643100 ~ 26663715 (+) True pak2a
XM_026936648.2 mRNA upstream 4047 26643100 ~ 26663715 (+) False pak2a
XM_026936647.2 mRNA upstream 4047 26650575 ~ 26663715 (+) False pak2a
XM_034303686.1 mRNA upstream 25528 26632809 ~ 26642234 (+) True ing5b
XM_026936650.2 mRNA upstream 25528 26632817 ~ 26642234 (+) False ing5b
XM_034304037.1 mRNA downstream 17382 26685510 ~ 26688014 (+) True ptx3b
XM_034304038.1 mRNA downstream 17382 26685510 ~ 26688014 (+) False ptx3b
XM_026936651.2 mRNA downstream 20909 26689037 ~ 26696324 (+) False pdcd10b
XM_034304158.1 mRNA downstream 20909 26689037 ~ 26696324 (+) False pdcd10b
XM_026936653.2 mRNA downstream 20919 26689047 ~ 26696324 (+) False pdcd10b
XR_003404105.1 other upstream 3680 26663971 ~ 26664082 (+) True LOC113540735
TU84616 other upstream 291983 26353189 ~ 26375779 (+) True LOC117597079
TU84618 other upstream 303529 26353189 ~ 26364233 (+) False LOC117597079
XR_003404061.2 other upstream 374978 26288290 ~ 26292784 (+) True zgc:66427
XR_003404108.2 other downstream 445020 27113148 ~ 27113254 (+) True LOC113540738
trnat-ugu_5 other downstream 821125 27489253 ~ 27489325 (+) True trnat-ugu_5
XR_003404069.1 other downstream 888389 27556517 ~ 27556648 (+) True LOC113540695
XR_003404070.2 other downstream 889637 27557765 ~ 27557902 (+) True LOC113540696
trnat-ugu_6 other downstream 952477 27620605 ~ 27620677 (+) True trnat-ugu_6

Expression Profile


TU84751 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
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TU84751 Expression in each Bioproject

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TU84751 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 10.
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