RNA id: TU84789


Basic Information

Item Value
RNA id TU84789
length 668
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G71550
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26784572 ~ 26786560 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCAGGGTGAAGAGACAGCGACGGAGCTTGTAGTtccatacctacacacacacacacacacacacacacacacaggtttactctctcttgctctctgatAAAGCCGGGCAGTTACACTGCATTAGAATCAGGACACTGATGTTCGACCTTGATTTTGTAATCGTCTCCACCCGAGACAAACAGAGGCTGCTGCTTGTGGAAGTCGATCCCTCTCACCGGACCTgttcaacatacacacattagactataaacacacacacagagcattgaGGAAAAAATGTCGGACGCGTCTAACCGTCATGCTCGTCGAACTTATCGATGAGGGTGCACATGCGATAATCCCACAGCTGGATGACGCCGTTGTGAAGACTGGCCAGGATCCACGGCCGCTTCGGGTGGAAACTCAGCccTCACTCGAGCTGATTTGGTCTCGAATTTGGTTAACATCTCCGCGTTTCTGCGTGTCTAATCCAACAATCCAATCTAAAGATAGCTGGTGTGCAGAAGTGATTtctataattaataattcttctcttttctctctctctctctcgcggcTTCTGCACTTCCTCAGCTGACACGTCTACCGAAATAAAGTGTTTCCTGCGCGGAgtcaaataaagttttttttttgtgtccaaAACGTGACGGAGAAATCTCCACGTCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84751 lncRNA upstream 116444 26667762 ~ 26668128 (+) True G71519
TU84702 lncRNA upstream 233546 26472575 ~ 26551026 (+) True G71485
TU84695 lncRNA upstream 320258 26464011 ~ 26464314 (+) True G71482
TU84608 lncRNA upstream 489590 26294755 ~ 26294982 (+) True G71408
XR_004578087.1 lncRNA upstream 558157 26225431 ~ 26226415 (+) True LOC117597184
TU84796 lncRNA downstream 21497 26808057 ~ 26856605 (+) True G71557
TU84807 lncRNA downstream 86116 26872676 ~ 26881469 (+) True gng7
TU85145 lncRNA downstream 256143 27042703 ~ 27042912 (+) True G71819
TU85154 lncRNA downstream 287281 27073841 ~ 27074076 (+) True G71827
TU85197 lncRNA downstream 409441 27196001 ~ 27196373 (+) True G71864
XM_026937111.2 mRNA upstream 14328 26766984 ~ 26770244 (+) True apoda.1
XM_034303685.1 mRNA upstream 14328 26766984 ~ 26770244 (+) False apoda.1
XM_034303684.1 mRNA upstream 14328 26767774 ~ 26770244 (+) False apoda.1
XM_034303332.1 mRNA upstream 19968 26751636 ~ 26764604 (+) True ifi44c2
XM_026936198.2 mRNA upstream 46294 26735443 ~ 26738278 (+) True si:dkey-193b15.8
XM_026937081.2 mRNA downstream 29501 26816061 ~ 26818849 (+) True gadd45bb
XM_026936552.2 mRNA downstream 37126 26823686 ~ 26831573 (+) True sec62
XM_026937094.2 mRNA downstream 60331 26846891 ~ 26854149 (+) False elavl1a
XM_034304041.1 mRNA downstream 60364 26846924 ~ 26854149 (+) True elavl1a
XM_034304042.1 mRNA downstream 63800 26850360 ~ 26854149 (+) False elavl1a
XR_003404105.1 other upstream 120490 26663971 ~ 26664082 (+) True LOC113540735
TU84616 other upstream 408793 26353189 ~ 26375779 (+) True LOC117597079
TU84618 other upstream 420339 26353189 ~ 26364233 (+) False LOC117597079
XR_004578101.1 other upstream 491788 26288292 ~ 26292784 (+) False zgc:66427
XR_003404108.2 other downstream 326588 27113148 ~ 27113254 (+) True LOC113540738
trnat-ugu_5 other downstream 702693 27489253 ~ 27489325 (+) True trnat-ugu_5
XR_003404069.1 other downstream 769957 27556517 ~ 27556648 (+) True LOC113540695
XR_003404070.2 other downstream 771205 27557765 ~ 27557902 (+) True LOC113540696
trnat-ugu_6 other downstream 834045 27620605 ~ 27620677 (+) True trnat-ugu_6

Expression Profile