RNA id: TU84840


Basic Information

Item Value
RNA id TU84840
length 289
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G71589
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26464030 ~ 26464318 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggacaatcaactgtccttctcctctcacattgctaatctaacatgctcatgtcgatttctcctttataacatcagaagaattcgtccatttctttcctcacaggccacacaggtgcttgttcagtcccttgtcatttcaagactggactactgcaactcactcctggcaggtctgcctctgagcaccattcgtcctctgcaactgatccagaatgcagctgcacgattggttttcaaccttcctaaattttcccacaccaccccattgctgcgctccctccactggctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84686 lncRNA downstream 36656 26426258 ~ 26427374 (-) True G71474
TU84680 lncRNA downstream 48278 26407975 ~ 26415752 (-) True G71470
TU84681 lncRNA downstream 49536 26409175 ~ 26414494 (-) True G71471
TU84679 lncRNA downstream 51682 26402539 ~ 26412348 (-) True G71469
TU84665 lncRNA downstream 81508 26368686 ~ 26382522 (-) True G71456
XR_004577960.1 lncRNA upstream 32715 26497033 ~ 26499267 (-) False LOC113540239
XR_003404010.2 lncRNA upstream 32715 26497033 ~ 26499267 (-) True LOC113540239
TU84851 lncRNA upstream 85776 26550094 ~ 26551030 (-) True G71596
TU84896 lncRNA upstream 93911 26558229 ~ 26559138 (-) True G71636
TU84978 lncRNA upstream 197541 26661859 ~ 26663778 (-) True G71693
XM_026935883.2 mRNA downstream 11199 26446458 ~ 26452831 (-) True si:dkeyp-66d1.7
XM_034303639.1 mRNA downstream 87622 26371921 ~ 26376408 (-) True ltb4r2b
XM_026935881.2 mRNA downstream 96055 26338735 ~ 26367975 (-) True sdr39u1
XM_026935989.2 mRNA upstream 114476 26578794 ~ 26595990 (-) False sppl2
XM_026935988.2 mRNA upstream 114477 26578795 ~ 26595990 (-) True sppl2
XM_026936649.2 mRNA upstream 208429 26672747 ~ 26678848 (-) True ccnl1b
XM_026936093.2 mRNA upstream 243764 26708082 ~ 26712304 (-) True slitrk3b
XM_034303683.1 mRNA upstream 306264 26770582 ~ 26786518 (-) True copa
TU84653 other downstream 87942 26373758 ~ 26376088 (-) False ltb4r2b
TU83344 other downstream 2159104 24304374 ~ 24304926 (-) True G70255
XR_003404116.1 other downstream 2427176 24036718 ~ 24036854 (-) True LOC113540746
LOC117597117 other downstream 2932014 23531238 ~ 23532016 (-) True LOC117597117
LOC113540013 other downstream 2946360 23516930 ~ 23517670 (-) True LOC113540013
TU84853 other upstream 7762 26472080 ~ 26551030 (-) False G71596
TU84852 other upstream 72784 26537102 ~ 26551030 (-) False G71596
TU85159 other upstream 632284 27096602 ~ 27100858 (-) True G71832
TU85245 other upstream 739465 27203783 ~ 27204186 (-) True G71909
trnat-ugu_3 other upstream 931039 27395357 ~ 27395429 (-) True trnat-ugu_3

Expression Profile