RNA id: TU84851


Basic Information

Item Value
RNA id TU84851
length 915
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G71596
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26472080 ~ 26551030 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAATGCACCTCGTTGCTTTTATTAACAGCAGAAACGTATTAACACCTGGAAGCTCAGGCGTCTACAACACTTGGGCAAGAGGAAGATTAGTATGATTTCAGTATTAGAAAAAgagaacaacaataataataataataataataataataataaaagattaaagatGCAAAAGGTGCATCTCATCCATAacccaataaaatatttatcaaagCAGCACCTACTGGTCAGATCTGTCtgttctcacactcacacacacacacacacacacacacacacacacacacacacacacacacaccatagctTAAGATTCTGTACATTTCAATTTTGgctgaactgttcctttaatctAGAGACGTCAGAGCTTtgtcaccatgacaacaactCAAAACAGCACAGGCTTATGTTactgtcattaaaaatgtaaataaactcaAAACTGTGAATCAGGGGTCTGAGATATAAACAACCACTTAACTGGCAGTGACTACAAACTGAATatgttgctaatgctaacattaaGTGAGCTAACTCTGAGCAGCTACACTCGCTAATCTGTCGTCTGAGGCATGTGAGCACTGAAGGATTCGGCTTTGAATAGTAAAATCTTCTCTCAGCTGTTGTCATGGTAATGCCTCATAGCATCAAGACACACTCCCATTTAACAATGTAATGGCAAGGCTCTGAGGTCAGtaggaacgtgtgtgtgtgtgcacaatttAGTGATACAGTTGTATAGTGTCCTTCAGCTTTAACACAGAGAtaatacagaaaaacataaatacattctACACACATCTATCCATCATCTGTGTGGACAACAATACtgaacagggagagagagagagagagagagagagagagaggaataaagaAAGGCCAAACAAGAaggaaagacaagaaaaaacatacacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577960.1 lncRNA downstream 50827 26497033 ~ 26499267 (-) False LOC113540239
XR_003404010.2 lncRNA downstream 50827 26497033 ~ 26499267 (-) True LOC113540239
TU84840 lncRNA downstream 85776 26464030 ~ 26464318 (-) True G71589
TU84686 lncRNA downstream 122720 26426258 ~ 26427374 (-) True G71474
TU84680 lncRNA downstream 134342 26407975 ~ 26415752 (-) True G71470
TU84896 lncRNA upstream 7199 26558229 ~ 26559138 (-) True G71636
TU84978 lncRNA upstream 110829 26661859 ~ 26663778 (-) True G71693
TU84981 lncRNA upstream 115187 26666217 ~ 26666592 (-) True G71695
TU84982 lncRNA upstream 116033 26667063 ~ 26667730 (-) True G71696
TU84983 lncRNA upstream 117265 26668295 ~ 26668558 (-) True G71697
XM_026935883.2 mRNA downstream 97263 26446458 ~ 26452831 (-) True si:dkeyp-66d1.7
XM_034303639.1 mRNA downstream 173686 26371921 ~ 26376408 (-) True ltb4r2b
XM_034303641.1 mRNA downstream 182145 26338735 ~ 26367949 (-) False sdr39u1
XM_026935989.2 mRNA upstream 27764 26578794 ~ 26595990 (-) False sppl2
XM_026935988.2 mRNA upstream 27765 26578795 ~ 26595990 (-) True sppl2
XM_026936649.2 mRNA upstream 121717 26672747 ~ 26678848 (-) True ccnl1b
XM_026936093.2 mRNA upstream 157052 26708082 ~ 26712304 (-) True slitrk3b
XM_034303683.1 mRNA upstream 219552 26770582 ~ 26786518 (-) True copa
TU84653 other downstream 174006 26373758 ~ 26376088 (-) False ltb4r2b
TU83344 other downstream 2245168 24304374 ~ 24304926 (-) True G70255
XR_003404116.1 other downstream 2513240 24036718 ~ 24036854 (-) True LOC113540746
LOC117597117 other downstream 3018078 23531238 ~ 23532016 (-) True LOC117597117
LOC113540013 other downstream 3032424 23516930 ~ 23517670 (-) True LOC113540013
TU85159 other upstream 545572 27096602 ~ 27100858 (-) True G71832
TU85245 other upstream 652753 27203783 ~ 27204186 (-) True G71909
trnat-ugu_3 other upstream 844327 27395357 ~ 27395429 (-) True trnat-ugu_3
trnat-ugu_4 other upstream 845121 27396151 ~ 27396223 (-) True trnat-ugu_4
XR_003404034.2 other upstream 877390 27428420 ~ 27432678 (-) False LOC113540508

Expression Profile