RNA id: TU84896


Basic Information

Item Value
RNA id TU84896
length 661
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G71636
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26558229 ~ 26559138 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTGTCAGTGAACAGAGTCAGTGAGAGTCAGTGAACAGAGTCAGTGAGTGTCAGTGAACAGAGTCAGTGAGAGTCAGTGAACAGAGTCAGTGAGAGTCAGTGAACAGAGTCAGTGAGAGTCAGTGAACAGTGTCAGTGAACAGAGTCAGTGAGTGTCAGTGAACAGAGTCAGTGAGTGTCAGTGAACAGAGTCAGTGAACAGAGTCAGTGAGAGTCAGTGAACAGAGTTGAAGCCACGCAGTGAAACTGATGAACAGATGGCAGATAAATCACACACAGGGAATGCATGGAATGCAGGAGACACAAAccgaaaaaacaaaaactaccaaaatttaaaagctaCCCCactgaaagttttattttaactttttttttcgacatttaaattttaacgTGCACGCGCAGTCCTCGGCCTTAACTACACCAACGTTAAAAAGTCGTTAAAGTTTTAACCACAAAGTCATTTACTCACCAGTTTAATCTTCTTCTAAAACCAGGACatcattccacaacatttaatccCAAACTCTGAAGCGCACAGTGAAATAATATCAgctcgtgtgtgtgcgtgtttattttattttgtttttaacttcTTTGTCATTTCTTCACTCCGGCATACGTACAGCAAGTGCACACGAAACCAAGGGCTAGAGacaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84851 lncRNA downstream 7199 26550094 ~ 26551030 (-) True G71596
XR_004577960.1 lncRNA downstream 58962 26497033 ~ 26499267 (-) False LOC113540239
XR_003404010.2 lncRNA downstream 58962 26497033 ~ 26499267 (-) True LOC113540239
TU84840 lncRNA downstream 93911 26464030 ~ 26464318 (-) True G71589
TU84686 lncRNA downstream 130855 26426258 ~ 26427374 (-) True G71474
TU84978 lncRNA upstream 102721 26661859 ~ 26663778 (-) True G71693
TU84981 lncRNA upstream 107079 26666217 ~ 26666592 (-) True G71695
TU84982 lncRNA upstream 107925 26667063 ~ 26667730 (-) True G71696
TU84983 lncRNA upstream 109157 26668295 ~ 26668558 (-) True G71697
TU84984 lncRNA upstream 111129 26670267 ~ 26671138 (-) True G71698
XM_026935883.2 mRNA downstream 105398 26446458 ~ 26452831 (-) True si:dkeyp-66d1.7
XM_034303639.1 mRNA downstream 181821 26371921 ~ 26376408 (-) True ltb4r2b
XM_034303641.1 mRNA downstream 190280 26338735 ~ 26367949 (-) False sdr39u1
XM_026935989.2 mRNA upstream 19656 26578794 ~ 26595990 (-) False sppl2
XM_026935988.2 mRNA upstream 19657 26578795 ~ 26595990 (-) True sppl2
XM_026936649.2 mRNA upstream 113609 26672747 ~ 26678848 (-) True ccnl1b
XM_026936093.2 mRNA upstream 148944 26708082 ~ 26712304 (-) True slitrk3b
XM_034303683.1 mRNA upstream 211444 26770582 ~ 26786518 (-) True copa
TU84853 other downstream 7199 26472080 ~ 26551030 (-) False G71596
TU84852 other downstream 7199 26537102 ~ 26551030 (-) False G71596
TU84653 other downstream 182141 26373758 ~ 26376088 (-) False ltb4r2b
TU83344 other downstream 2253303 24304374 ~ 24304926 (-) True G70255
XR_003404116.1 other downstream 2521375 24036718 ~ 24036854 (-) True LOC113540746
TU85159 other upstream 537464 27096602 ~ 27100858 (-) True G71832
TU85245 other upstream 644645 27203783 ~ 27204186 (-) True G71909
trnat-ugu_3 other upstream 836219 27395357 ~ 27395429 (-) True trnat-ugu_3
trnat-ugu_4 other upstream 837013 27396151 ~ 27396223 (-) True trnat-ugu_4
XR_003404034.2 other upstream 869282 27428420 ~ 27432678 (-) False LOC113540508

Expression Profile