RNA id: TU84978


Basic Information

Item Value
RNA id TU84978
length 1876
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G71693
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26661859 ~ 26663778 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGAATGTCTCATCACCagaacaggctcactgaaatGTAGTTTGCttgaagtgggaaaaaaaaaaaagttagatttcacaaaatttattcatttttaaggcAACAGTTAAAGAGGTTTAATTTGCAGTTATCAGATTGTTagttgaaaaatataaaatatagttatacatgtacaatataaaatattgttatacatgtacataaatataaaaaaaaaataaacaaagtcagAGACAAAAACTTCCTGATTCCTGTTGTGCTAATGGAAATACATCATATACAAAACCATTTCTTACATTTATTAGATTCCTAACACATGATCACACAGACATTAcaggaaaagaaattaaaataaaaaaaaaggaaaacaaaaatccaaaaccTCCTCCGCAGAGATACAGCAGTGTTAAAGAAGACATCGTGCTATGGAAGCCCACATGGGACATGTGAAAGGTGAAGCTCTAGAATGttctcaataataataataataacaataataataataataagcacttCCATAGaaatagggaaaaaagaaagattaaaaaaacaaagagaattATTAAGGATGACACAGACACTCAGGTGGTGTCTGATGTAACCAAGGCAACaacgatgatgatgaaaaacaaaaaaattatgataaaaTACAAGATTTATTACTGTGTAGATTTATAAATCTTACAGTTTGTGGAATACTGAAAGAAAAATCTTTTTGTTTGGAAATTGGAAAGACActagcacacacaaacacgcacacgcgcgctcacacaatcacacacgcacacacacacacacacacacacacacacacacacacacagtcctggcTGCACTTCTGGTTCTGATCAGAAGATTCTAGAACCTTAAAGAACTGCTCACACTGACAGACTTTCATTTCCAGTAAAGTTTACACCCCTAGGTCTCATCCTGGTACGTTTCTATGGCAACCGCACCCAACATCAGCTGGCACTTCAGCGCAGTAATGCTGTTCTATTAACCCTGGGATGTTTACAGTGACAGGAATCGGAGCCAATGCTGGTGATGTAAAGTGGGTGGGGCCGGCAAACCAGGAAAAAAGGTGTAAAGATAAGAGAGTTTACCTTTACGCAAATGTTATACGAAATGGGGCCAGCAAAAAGTTTCGAGATGTTTTACTTTAGGCAAAATTTATGCCAACCAATAGGAGTGAGGGACGGTGTTTGACTTTCTCACCACCCCTCCTGAGAAGAACTGAAGAGCTCAATGGAGCAGAACTGAAGAGTTCAATGAATGATTTCCCttcagaatgttttatttttattcagactTAACCGTGTTCGCAGTTTTGCACTCGTTCACATGTTCAGTAATATCACTATAAAGTGACTCTTCAGGAAAGCGCCCCCTGTTTGGCTGCAGCTGCTCTACAAGTTAAAACCTCATTTCTAGCCTCATGTGCTTGTCGCGGTGACCGTTGTGTTTATTAGTGATTATCCGGTGGTATTTAGCCATTAGCGTGGTTCACTGTCAGAAAATTTACTGCATTTCTCCCCTCTTCCTCTGCTGGTAGCGTAAAGTTGCCAAAGTAACTCAGAGGCCCTGCAgctccacactcacacacacacactgctgtgtctgtctaataactttaataataataaaataatcagatttgTGTGAGGACACGTCCACATCTGACCATGCAGCGGTTTGGTTGATTGCATATATacgataaaacacacacacacacacacacacacacacaaacccacacccAGTAGGCGGGCGGGGCATGTCCGGGGTTAGCGGCTACTCTTCATGGCCTCCTTGGCGGCAAGGATGAGGGGGGTGAGACTGGACAGAGGCTTCGCTAGCTTCAGGAACGAGTGCTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84896 lncRNA downstream 102721 26558229 ~ 26559138 (-) True G71636
TU84851 lncRNA downstream 110829 26550094 ~ 26551030 (-) True G71596
XR_004577960.1 lncRNA downstream 162592 26497033 ~ 26499267 (-) False LOC113540239
XR_003404010.2 lncRNA downstream 162592 26497033 ~ 26499267 (-) True LOC113540239
TU84840 lncRNA downstream 197541 26464030 ~ 26464318 (-) True G71589
TU84981 lncRNA upstream 2439 26666217 ~ 26666592 (-) True G71695
TU84982 lncRNA upstream 3285 26667063 ~ 26667730 (-) True G71696
TU84983 lncRNA upstream 4517 26668295 ~ 26668558 (-) True G71697
TU84984 lncRNA upstream 6489 26670267 ~ 26671138 (-) True G71698
TU84985 lncRNA upstream 7482 26671260 ~ 26671536 (-) True G71699
XM_026935989.2 mRNA downstream 65869 26578794 ~ 26595990 (-) False sppl2
XM_026935988.2 mRNA downstream 65869 26578795 ~ 26595990 (-) True sppl2
XM_026935883.2 mRNA downstream 209028 26446458 ~ 26452831 (-) True si:dkeyp-66d1.7
XM_034303639.1 mRNA downstream 285451 26371921 ~ 26376408 (-) True ltb4r2b
XM_034303641.1 mRNA downstream 293910 26338735 ~ 26367949 (-) False sdr39u1
XM_026936649.2 mRNA upstream 8969 26672747 ~ 26678848 (-) True ccnl1b
XM_026936093.2 mRNA upstream 44304 26708082 ~ 26712304 (-) True slitrk3b
XM_034303683.1 mRNA upstream 106804 26770582 ~ 26786518 (-) True copa
XM_026935911.2 mRNA upstream 123309 26787087 ~ 26790914 (-) True pex19
XM_034304027.1 mRNA upstream 128245 26792023 ~ 26805367 (-) False map1sb
TU84853 other downstream 110829 26472080 ~ 26551030 (-) False G71596
TU84852 other downstream 110829 26537102 ~ 26551030 (-) False G71596
TU84653 other downstream 285771 26373758 ~ 26376088 (-) False ltb4r2b
TU83344 other downstream 2356933 24304374 ~ 24304926 (-) True G70255
XR_003404116.1 other downstream 2625005 24036718 ~ 24036854 (-) True LOC113540746
TU85159 other upstream 432824 27096602 ~ 27100858 (-) True G71832
TU85245 other upstream 540005 27203783 ~ 27204186 (-) True G71909
trnat-ugu_3 other upstream 731579 27395357 ~ 27395429 (-) True trnat-ugu_3
trnat-ugu_4 other upstream 732373 27396151 ~ 27396223 (-) True trnat-ugu_4
XR_003404034.2 other upstream 764642 27428420 ~ 27432678 (-) False LOC113540508

Expression Profile