RNA id: TU84983


Basic Information

Item Value
RNA id TU84983
length 264
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G71697
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26668295 ~ 26668558 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tcGCTataatcactcactcactgtaatcacacactcattataatcacactcactataatcaaaCACTCACTTCAATCaaacactataatcacacacttgctataatcacacactcattacaatcacacactcactacaatcatacacacactacaatcatgCATACactataataatcacacacactcattataatcacacattcACTCTATTAATCATACACATCCTTTAATAATCACATTtgctataataataacactataa

Function

GO:

id name namespace
GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors molecular_function
GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84982 lncRNA downstream 565 26667063 ~ 26667730 (-) True G71696
TU84981 lncRNA downstream 1703 26666217 ~ 26666592 (-) True G71695
TU84978 lncRNA downstream 4517 26661859 ~ 26663778 (-) True G71693
TU84896 lncRNA downstream 109157 26558229 ~ 26559138 (-) True G71636
TU84851 lncRNA downstream 117265 26550094 ~ 26551030 (-) True G71596
TU84984 lncRNA upstream 1709 26670267 ~ 26671138 (-) True G71698
TU84985 lncRNA upstream 2702 26671260 ~ 26671536 (-) True G71699
TU84986 lncRNA upstream 3083 26671641 ~ 26671845 (-) True G71700
TU84990 lncRNA upstream 20512 26689070 ~ 26690394 (-) True G71704
TU84992 lncRNA upstream 26388 26694946 ~ 26696321 (-) True G71705
XM_026935989.2 mRNA downstream 72305 26578794 ~ 26595990 (-) False sppl2
XM_026935988.2 mRNA downstream 72305 26578795 ~ 26595990 (-) True sppl2
XM_026935883.2 mRNA downstream 215464 26446458 ~ 26452831 (-) True si:dkeyp-66d1.7
XM_034303639.1 mRNA downstream 291887 26371921 ~ 26376408 (-) True ltb4r2b
XM_034303642.1 mRNA downstream 301959 26338735 ~ 26366336 (-) False sdr39u1
XM_026936649.2 mRNA upstream 4189 26672747 ~ 26678848 (-) True ccnl1b
XM_026936093.2 mRNA upstream 39524 26708082 ~ 26712304 (-) True slitrk3b
XM_034303683.1 mRNA upstream 102024 26770582 ~ 26786518 (-) True copa
XM_026935911.2 mRNA upstream 118529 26787087 ~ 26790914 (-) True pex19
XM_034304027.1 mRNA upstream 123465 26792023 ~ 26805367 (-) False map1sb
TU84853 other downstream 117265 26472080 ~ 26551030 (-) False G71596
TU84852 other downstream 117265 26537102 ~ 26551030 (-) False G71596
TU84653 other downstream 292207 26373758 ~ 26376088 (-) False ltb4r2b
TU83344 other downstream 2363369 24304374 ~ 24304926 (-) True G70255
XR_003404116.1 other downstream 2631441 24036718 ~ 24036854 (-) True LOC113540746
TU85159 other upstream 428044 27096602 ~ 27100858 (-) True G71832
TU85245 other upstream 535225 27203783 ~ 27204186 (-) True G71909
trnat-ugu_3 other upstream 726799 27395357 ~ 27395429 (-) True trnat-ugu_3
trnat-ugu_4 other upstream 727593 27396151 ~ 27396223 (-) True trnat-ugu_4
XR_003404034.2 other upstream 759862 27428420 ~ 27432678 (-) False LOC113540508

Expression Profile