RNA id: TU85022


Basic Information

Item Value
RNA id TU85022
length 3269
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G71732
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26853267 ~ 26856672 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTCCATTTGCTTggcattttatttgaaataaacacCACGTTACAGTCCGACTGTAAATTTCAAAATGgcgataaaaaaaacaaagaatctTCAGTGAACACGTACGacaataaatataacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaagtgaagAAACACCGCACATCACCAAGAGGTCAGAGCAGGACAATTACACTCACAACTTTAACACCAGCTTCTTACGCACAGAGTTTATACAATACactaacaggtgtgtgtgtgtgcgtgtgtgtgtccgtccaACATCAAATGACAAATCATCTTCAGCATGCCCATCATCATCTGTGCATTTCTACACAGAGATGGGGAAGGTGGGAGGGAGggggagaatgagagagagagacatgaagacagtgagacagtgagatagaTAGAAGAGGAAGATAGAAACAAGGATAGAAGGACACAGAGGAAAAGACAccaaaagagagacagagcaagacagaggGAGATAGTCAGAAACAggcactgagagacagagagagctaaaaatgagagagacaaatagggagagagagagagagagagtgagccgagagcagagacaaaaagagagacatgCAGAACGagacccttatatatatatatataaaacaaacatgtaaccatggcaacaatgAGTGCTGTTGCCATGGTCACACTGAACTTAACTCACAAGGATCTCACAGCTAGCTGTAGCTACAGTATTGTAATAACATTATAAACCATGATAAACAACATTCAGCAGCTCCGAATAGCTCGTCTTTATACGATATCAGCCAATCATAGAATTGATTCTCCTGCATcgtacatcttttttttttttttttttacatcactgcCATCATGGTAGTTATTCTTCATAAAACCAGCATACCGGTGAAGAGAATTCTCAAAATGTAAAGACACGTGCACAAAATAAAGATTATTCCATGTGCCACCCTCTGAACAGCACAGATTCTTGTTTACTACTTAGGCAGCCTCCTGAAGTACCCTtgatgattaaatataaatgtaataattatcaTATGAATTAATTTGCTACATGTGTAATTACAAACCAGAAgtgtctgattatttttttccccatttcctgatatttgaCACTGTGCACTACTGTCGATTAAAACTGAACACTGATTTAGAACAGGACTGCCAGCACTAAAAAtccactgttaaataaatatttacaaaatgcaaTATTTCAGTGTCTTGGTCCTACTGCTTAAAACTCTAATCTAATCCAAGCTAATCTTTAGCCATGTCATGCGAACGCCAAAActgaatataaatttatttggGATAATAAAAAGCTGTCTAATacgatttaaaaataaaccaaacaaataaaacctaaTAAGAAGtaaaggaaacaaaacaaaatgttcggcaaatcaaaataaaatttaatgatCAGAATTGTCAAACAAtctcaaaacacaaacaaacaaacaaacaaaaaaaaagatcaaaaggCCGTCTTTTAAGATTAGtactaaggaaaaaaaatacaactaaagTCACATtaaacaagagaaaataaagaaaattaagaaaaaataagcaaataacaaaAGCTTGAAGCTGAAATGAGAACAGGGGAACTACATTATGTTGTAATTTTTCTGGGGGAATTTTCCATGTCTTTGGTCCTTCTTACTTTCACTCACTCTGTtgcttattattctttttaactTAGAGGATcacttaaataaacactttccaCTTCACTGAACACACCACAGACTCAATCAGGAAAAGTGCCTCAGTCAAAaactggaggaaaaaagaaaggggaaaaaaaaaaaaaaaaaaaaggtttcttaaaaataataaggCATCAAATGTTGAAACACTGTACTAGGATCAGATGGAGAATCAGTGACTTTTGAGAATGTCTAAAACATCCCATAATAATCATAGACTTACAGTTAGACAAACTGGCTGAATTTAAAGGATAAACTGTGTGAGGTGTTCATGTTACAATCAAGACACCTTAGAAAATTTcacaataacaccaacatgACTatagtttcctttttttgaaattagccccgcccacatgGAGAATCAGGTTCCACccctttccccctttttttcaatgttttcgATGCAGTTCCGCAAACAGACAGCAGAGAGCGCCTCACACACTGCTCCATTAACACGTTTATCATTCTTAGCAGGAACAAAACGGGTTCAGATCTAATACAGCTACCAGAATTTCAAATCCAATCCAATACTCGACGTCCGCGCAGCGACCGAGCTGTGACCTGTGCGTGTGTGCGGCTAACAATACTACACACATCAAGGACTGAAaactacacatttaaaaaaaccttaACTTATAAAGAACAACAAAGATAGAAATGGACAGGTAGTCATGTACCTTCAGAAAATCTCGCTAGCAACTTGCAGTtagaataacaaaaacaaaaaaaaaggagaaatgtcAGTGATGGGGCGTCTTCTCAACCCCTCTTGcagtggagggaaaaaaaaaaagaaaagaaaaaaaaagaaaaacctacCTAAGCTAAGCCAAGTGAAATTATACTACAAAGGAAttcctgggggaaaaaaagcaagactGAATTATTGACCATTTTGTGTAACTTTTTATACTTCAGTCACAGCCTTAGGTGCAAAAATGAGCAGATGAGATGGAGAGACCGATGTGGTGTGAAGTGGACTAACACACAGGGCATGTGGCAATAATCAGTTAAACGATACATCAAGATATTAAAGTAATTGCGGTCGTTATGAGTGCAGTGACGTAGTGACGTTAGGTGTGTGAGGATGGTGatgagcacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagaagcagatgaAACTATAAAACAGCGGCTTTCCAAGCAAAGTCCGTCTACTTGTGAGTCTTGCTGGTTTTGAAGGACACCTGCAGGATCTTGTCCCCCAGTCTGTAGCCGTTGAGGCTAGCGATAGCCACAGCCGCCTCCTCGTAATTGGTCATGGTGACGAAGCCGAAGCCTTTGCACTTGTTGGTGTTGAAGTCTCGGATCACTTTGACGTTGGTGACGGCGCCGAACGGACCGAACATCTGCCACAGAATTCCCTCATCTGCGTCCGGACCCAGATTATAGATGAAGATGCACCACCCGGCCTGCGCACTCCCGCCCATGTTCGCTCCGGACAGACCACCCATGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84994 lncRNA downstream 156170 26696893 ~ 26697097 (-) True G71707
TU84992 lncRNA downstream 156946 26694946 ~ 26696321 (-) True G71705
TU84990 lncRNA downstream 162873 26689070 ~ 26690394 (-) True G71704
TU84986 lncRNA downstream 181422 26671641 ~ 26671845 (-) True G71700
TU84985 lncRNA downstream 181731 26671260 ~ 26671536 (-) True G71699
TU85065 lncRNA upstream 38009 26894681 ~ 26895564 (-) True G71764
TU85066 lncRNA upstream 78318 26934990 ~ 26935197 (-) True G71765
TU85140 lncRNA upstream 174645 27031317 ~ 27036462 (-) True G71815
TU85141 lncRNA upstream 174645 27031317 ~ 27035852 (-) False G71815
TU85185 lncRNA upstream 286434 27143106 ~ 27151314 (-) False G71854
XM_034303326.1 mRNA downstream 8249 26835646 ~ 26845018 (-) False samd7
XM_034303325.1 mRNA downstream 9294 26835646 ~ 26843973 (-) False samd7
XM_034303324.1 mRNA downstream 9985 26835646 ~ 26843282 (-) False samd7
XM_026936549.2 mRNA downstream 10098 26835646 ~ 26843169 (-) True samd7
XM_034303851.1 mRNA downstream 17379 26835025 ~ 26835888 (-) True LOC117597119
XM_026937244.2 mRNA upstream 24796 26881468 ~ 26889336 (-) True nadkb
XM_026937243.2 mRNA upstream 24796 26881468 ~ 26889334 (-) False nadkb
XM_026936963.2 mRNA upstream 47236 26903908 ~ 26913580 (-) False skila
XM_026936961.2 mRNA upstream 47236 26903908 ~ 26913580 (-) True skila
XM_026936874.2 mRNA upstream 60487 26917159 ~ 26933519 (-) True prkci
TU84853 other downstream 302237 26472080 ~ 26551030 (-) False G71596
TU84852 other downstream 302237 26537102 ~ 26551030 (-) False G71596
TU84653 other downstream 477179 26373758 ~ 26376088 (-) False ltb4r2b
TU83344 other downstream 2548341 24304374 ~ 24304926 (-) True G70255
XR_003404116.1 other downstream 2816413 24036718 ~ 24036854 (-) True LOC113540746
TU85159 other upstream 239930 27096602 ~ 27100858 (-) True G71832
TU85245 other upstream 347111 27203783 ~ 27204186 (-) True G71909
trnat-ugu_3 other upstream 538685 27395357 ~ 27395429 (-) True trnat-ugu_3
trnat-ugu_4 other upstream 539479 27396151 ~ 27396223 (-) True trnat-ugu_4
XR_003404034.2 other upstream 571748 27428420 ~ 27432678 (-) False LOC113540508

Expression Profile