RNA id: TU85141


Basic Information

Item Value
RNA id TU85141
length 4304
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G71815
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27031317 ~ 27036462 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTCATTCTTTACCTGTTTCATCAGTCCCAGTGCCACATATCCCGCTTTCGTGCCACTGAGCTCAAAGGAGAAATTTTGACTTTTCGTTTGAACTGAGCTGAAAAAGCAGCTGGAGTTTCCTGCAGGATTGCAACCAGATGCGTTTGAGAAACACAGCTTAGAGCTGCCACATCCGTCACGCGTGATGTTGAGCTGAagattaaaagagagaaaacaaaccaacatTAATTCAAGTATGATCAGTGTCATTAACATAACTCAATGAGACATAACTGTGTAGTTAAACAGGAGAGTTAGGAAGAGTGATGCTGATTGTGAATAATAAACTCCATTACCACTACCACTGGAATATTGCTCTTGGGATTTGCCAGGTCTAATGGTCCGGAGCTAAATATTGTAGTCAGATTTCCCAGGGCTGTTCCTGTAGGAATGGAATGGAGAATCTTTAATGAACCTCACTTTTGGTTGAACCCCTGCCACTATCTCTATAATCACtattttttgagagaaaatcATATGATAAGTATTAGAtgtatttgaattgaattgagttaaAATGCTTGATTTACAAAGATTTACAATGACTGTTGGAtgcaatacacaaaatgtaacaaaacaaCGCTCTTACCAGTCCTAGTTAGTATCAGCTAAGTAACTAGTCTGACTTGCTCTCCagattgaattgaatattcTCTGTCTCACGTATTCCCCTTGAAATCTCAGCGTGCGTCATGGCTTTTAGGCTGTTTTGCTTGTATtgccatgtgtgttttgttttggttcatgtcTTTTCTGGTTGTCTTACTAGTGTTTCATTATTACTCTCACCTATTTTCAGTTCCTCCCTTAATTAGTCTGTGTATTTAAGCCCTTGTGTCTCAACGCAAAGTCTAGAGAGAAAGCGACTTGACTTGACACAACTGCAGGAATTGAATCAAACATGCCGTGTGTTTTTtggatgaaacatttttatgtagatgctgtaactgtagagctgctaaactgagcttCGAGGCTTAAACTGAATCAAAGGAGagagctgtagcactgcagTAATGgcatgtgttctggagatttggactgaTGAAGAAAACGCTGGATGAAATACacgaaatgttttaaactagttatttatataattatctagtcATTTATCTAGTTATTTAATGTTCTCCATGCTCAGGGGATTTTGTGATTTCTAAGAGCACAagtttgtttaactttttttgttttactttcttattgctgtatttctgaccaatgaataaAAAGTTCCCCAATGGCCATGtggaattttttgtttgttagtctgtttgtttacttttttacttgTTATATGCAATGTGAATCCACACTAAATAGTAAACTAACCAATAGTATCGATTTCACACTGATTTGGACTCAATGACTGATAGGTGTAAATATAGGTGTAGCCAAATGCATATTTTTCTAGATATTTATTGATATTGGTATTAATCAAATCCAAAAAAcctgcaaatgtaaatgttaaatgtgaatgtaaatgtggtttttgttggattttacataaaaaagaaGTCATAAGAAAGGCTTTAAGGAATTGGTAAGAAGCACGAGAAATGTAAAAACTCACCATTTGTGGTTCCATTAAGGATAGTGACGTTGAAAGGCAGCTGAGTGAAAGTAGAATTGAAGGTGATGTTGAAGGTACACTGAACAAGACTCTGGTTTGCCATTACTGAACCCTGAATACTAGTTATATTTATGgtgctctaaaaaaaaagagacagacacagaaggaCAGAGATAGAATATTGGTTAGACACTCATCTCCATCAGTATTTGATGTAACATAAACTTTTGACAAATATTGTCAAAATAAATTACTATAGTGATTTGTTTGCCAAATcagtcaaaataaaatatttatttcaactCAATTTATTATGTATATTGTTCGTTTGTTACAGGGGATTGCCCCTGCTCTTTTGCCTTAGGTTAGAGtatattttggattttgttgTTTGTCTAATTGACTAGTTGAATTCAGGTTTGACTCCTGTTATTATCCAGGGGTAAATCGTACATTATTTTGATGATTTGTGtaagttttttgtcttattttgtgTTGCTGTATTTGCTTACTTGTGCATATTTTCTTGAACAAACCAACTGTAGTCTAATCCTTACATATTAGGTGGAGTGGACATGTAGATGAGGTGTTGGTGACACCGGAGGGCATGGGTGTGGTTTAATTGCAATAATTAACTTTGTTACTCACCTTTtgcagtgtgcatgtgtatgtgtgcgatCTTGGGACACGGGCATGCGTGGTATGGTAAGAGACTAGAGGTTCCCGTTGGTAAGTCCTCCCTTCCCAGCAGCCAAATTTATTTGCTCAACTTGTTATATTTTTTCCTACTTTACAATCTACTATGACACTGAGACTGCCCATTGAGGCCTAGCTTTTATGGTGAATGATAAACCTGCGTTTTCTGTCTTACTCATAGTGGGTTTAGGGTTTGTACATGACaagatcatttttaataaaattgtggaATGGTGAACTTGAAATTATTTCTCTGCTCTTGTTTTATCAATCAACCTGTGAAAGTGTACTACAAGTTCTTATGTTGTCTTGTGTAACTATCTTTTAGGTGTAGTCTGTCATATACTATCTACTTTACCCTTGCCCagattacatttataaatggttACTGTTAGCAGCTGTAAGTTTGGTTATTGTCTGTAGCATCTGCCTTCAATATGAAATTCAATGAAGTCTCTTACTGAATTGTTAGAATTAttgcaaatttattattattgagttagATTAGGTTGTTAGTATAAACAAACTCTTTCAGTGTCCATCACTCACATCTTACCGTATCAACAGAAGTCAACTGTGTGCCATTTTGAGTAGCTCTCTGGAAAAAtaaactgttgttgttgttgccgcagacaaacacagcactgactccctaaacagaaaagaaatcaataaaataGTAGCTCAGTAGAAGGGATGATTTGGACAAGGAAGTAAAATCCTTATTCGAACAGGTTTAGCAGCATATTCTCATTGTCTCATGAAGTTAAGTGAAAACAATGGGGAACAAACTTTTACTTAAATGGTTGCCCATGGTCAGAAACAAAgctgagggtgccaatactttttaaaagtgtgaaaaagtttTTGGTTTTATAAACTGCACTGAGAATGGAGATTTCAGAAAAGATCCGGGCAAACAAAAAATCTGTGGAATCGAAAGCAGTAGTTCCAGCTCATTGTCAAGGTAAGTTGTTTGACAGTTTATGACCTACTGTTGCCAACTAGGCCTAGGTTTGCTCAGGagcttttttttgtgcatgtgtgcatgcgtgcgtgtttgcatgtgtgtgtgtgtgtgagtgtgagtgggtGGAGATATTTTCAAAACCTTTGTCGAGgtcaaattttttaaaacagaagaGTAAACACTGTTTCGGTGGATGATTTGAAGATAAGCACTACGATTTCATCAATGCGTATACTATACAAATAACAGTTTCTCACACAGTTTACCACTTGTCTGATTGTGGTAATTTTTAAGGAATTCAATTttgaaatgtgatttaaaaaaattaactactGAACACCTATTACAAAATCATCatacaaaatatttgaaaatttttaaatgttctgttCCTGACTTGTTTTTGACATGAAACATTGTTCCTGAATTGATTTTGATAGTGAATGGCTCAGACATTTCTATTAGATATACATcttgaaagaaataaattaaaggaaacTAAATTAGCTTGAATTAAATTAGCAACTAAAACAGTCAAAGCTGAAATGTTTGTCAATAACAAAGCAATTTTGgtcatatttgttttgttactAACATTCAGTTGTCATAAGACATTGAACCAAACCTTGAAACAGAATCAAATATACTGAAGAGCAAAGCAAAAAGACTGTACGAGTGTAGGCAGAGGATCAGAAAGTATCTGATACAAGACATTATAGACAGAATAaaggtttaattttaaaaccCAGGACTGATGTAAATACtgtgaaatatgaatatattgtaATTTAAATGtgtttgtgagtTAATAATGCTACCTGATTTAGTGGCTGGGTTAGGTTGGTAGTGGCTATGAGTCCCAGTGCCACGTATCCTGAAGTACTGCCGGAGATTTCCACAGTCAGTACTGTACTACTGAGCTGAGTAGAGCTGAAAAAACAGCTGGAGTTTCCTGAAGGATCGCAATTACCCGGAGTCGACACACACAGCTTAGAGCTGCCACAAGTGGTACGAGTGATGGTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85066 lncRNA downstream 96120 26934990 ~ 26935197 (-) True G71765
TU85065 lncRNA downstream 135753 26894681 ~ 26895564 (-) True G71764
TU85024 lncRNA downstream 171862 26847346 ~ 26859455 (-) True G71734
TU85022 lncRNA downstream 174645 26853267 ~ 26856672 (-) True G71732
TU84994 lncRNA downstream 334220 26696893 ~ 26697097 (-) True G71707
TU85185 lncRNA upstream 107254 27143106 ~ 27151314 (-) False G71854
TU85183 lncRNA upstream 113058 27148910 ~ 27151314 (-) True G71854
TU85228 lncRNA upstream 138200 27174052 ~ 27174536 (-) True G71892
TU85232 lncRNA upstream 144082 27179934 ~ 27180140 (-) True G71896
TU85239 lncRNA upstream 155610 27191462 ~ 27191809 (-) True G71903
XM_026937110.2 mRNA downstream 49108 26981189 ~ 26982209 (-) True LOC113540546
XM_026936874.2 mRNA downstream 97798 26917159 ~ 26933519 (-) True prkci
XM_026936963.2 mRNA downstream 117737 26903908 ~ 26913580 (-) False skila
XM_026936961.2 mRNA downstream 117737 26903908 ~ 26913580 (-) True skila
XM_026937243.2 mRNA downstream 141983 26881468 ~ 26889334 (-) False nadkb
XM_034303296.1 mRNA upstream 69642 27105494 ~ 27108411 (-) False tmem125b
XM_026935890.2 mRNA upstream 69642 27105494 ~ 27108411 (-) True tmem125b
XM_026935891.2 mRNA upstream 69642 27105494 ~ 27107789 (-) False tmem125b
XM_034303292.1 mRNA upstream 72960 27108812 ~ 27143851 (-) False cfap57
XM_034303294.1 mRNA upstream 73216 27109068 ~ 27143851 (-) False cfap57
TU84853 other downstream 480287 26472080 ~ 26551030 (-) False G71596
TU84852 other downstream 480287 26537102 ~ 26551030 (-) False G71596
TU84653 other downstream 655229 26373758 ~ 26376088 (-) False ltb4r2b
TU83344 other downstream 2726391 24304374 ~ 24304926 (-) True G70255
XR_003404116.1 other downstream 2994463 24036718 ~ 24036854 (-) True LOC113540746
TU85159 other upstream 60750 27096602 ~ 27100858 (-) True G71832
TU85245 other upstream 167931 27203783 ~ 27204186 (-) True G71909
trnat-ugu_3 other upstream 359505 27395357 ~ 27395429 (-) True trnat-ugu_3
trnat-ugu_4 other upstream 360299 27396151 ~ 27396223 (-) True trnat-ugu_4
XR_003404034.2 other upstream 392568 27428420 ~ 27432678 (-) False LOC113540508

Expression Profile