RNA id: TU85183


Basic Information

Item Value
RNA id TU85183
length 1246
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G71854
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27143106 ~ 27151314 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGACATAATGAAATAATTCCAGCTACAGCTAGAGAAGGAATAATAATTACAGGTTGCAATAttggttttggaaaaaaaaaaaaaaaagacaataattcGTCTGGGAGCCAACTCTTATTAGTGAGCCGAGCCAAATGATCAAATCAATTAAATAAGATGTGACTCATTTcacataaactttttttttttcattttgtttatttcttgtgCCTATCACTGGTCACCAGAGAAAAACTTCCTACTGCCACAGGTAAAGCTACGACATAGAATCGGTGAGTCCTTGGTTCTGATTCGCCACCGAGCCGCCATGTTCGGGGAAAAATGAGTGTAAATCCACACAAACTTTGGCACTTGGAACAGTTGAACAGTGGTGCATTACAAAAAtcctggataaaaaaaatatccaaccAACAAAATGGCAAATTTATCCAGTCAACACATAACTCACAAATCATAAAGGAAAGCAACAACATAAGATGTGACATAAGATGTGATGTTACTGATGTGATCCATCAGTAAGAATCACTACGAGTCACTCCTTAAAGTCCTCctcaaaaacagcacacacacacactacaccaagcttccactatgtgtgtgtgtgtgtgtgtgtgtgtgtgtggagcaacTCGTGCCAACATGGAGGTCCACTGAAGTTCATGTAAGTCCAGTCAGATCTCCATGTTAAAGATGTTAATCACAGTCGCGTCTCATTTCCGCGCCTTCATCTTACGCCGTGCTTCTTTTCCTGGCCGCTTATTCTTCTTTCCACCTTTGCTGAACTTCTTGCCTACTTTGCCGTGAGCGACTTTGGCCCGGAATCCCGACACGTCGTTGTGGCTCTCCTTCGTGTTCCACTTGGAGCCTTTCTTTTTGCCGCCGAACCCAAACTTCGAGTCCTTGTACTTCCTCTTAGCGTTAGGGCTTAAAAACAGATAGCGGGACTTTGCTTAGTGGTAAAAAATGtggtaatttttttgtttttttcccccccagagTCAAAAATCAGATAATATCAAAGAAATAGGCCTGgaggaaaaaatgtaaatcaaatgTACACAAGTTCCTCTTTAGCTCCACCTCCTTTAGGCCCTGTCTCGAAAAGTTTAACAGTTAAATTGTAGAAGAAACAAGATGCGATGTTAATGATAAACACTTTCAACATAATTGTGTAAGAACGGATCATTGTTTATTAGAATTGGTTTAACAATGCAGGTAAAAGATtagagcaaacaaacaaatcttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85140 lncRNA downstream 112448 27031317 ~ 27036462 (-) True G71815
TU85141 lncRNA downstream 113058 27031317 ~ 27035852 (-) False G71815
TU85066 lncRNA downstream 213713 26934990 ~ 26935197 (-) True G71765
TU85065 lncRNA downstream 253346 26894681 ~ 26895564 (-) True G71764
TU85024 lncRNA downstream 289455 26847346 ~ 26859455 (-) True G71734
TU85228 lncRNA upstream 22738 27174052 ~ 27174536 (-) True G71892
TU85232 lncRNA upstream 28620 27179934 ~ 27180140 (-) True G71896
TU85239 lncRNA upstream 40148 27191462 ~ 27191809 (-) True G71903
TU85241 lncRNA upstream 44176 27195490 ~ 27195813 (-) True G71905
TU85243 lncRNA upstream 48104 27199418 ~ 27199741 (-) True G71907
XM_034303292.1 mRNA downstream 5059 27108812 ~ 27143851 (-) False cfap57
XM_034303294.1 mRNA downstream 5059 27109068 ~ 27143851 (-) False cfap57
XM_034303293.1 mRNA downstream 5059 27109068 ~ 27143851 (-) False cfap57
XM_034303295.1 mRNA downstream 5059 27114310 ~ 27143851 (-) True cfap57
XM_034303296.1 mRNA downstream 40499 27105494 ~ 27108411 (-) False tmem125b
XM_026936204.2 mRNA upstream 2185 27153499 ~ 27158015 (-) True LOC113540028
XM_026936576.2 mRNA upstream 86630 27237944 ~ 27261901 (-) False LOC113540236
XM_026936577.2 mRNA upstream 86630 27237944 ~ 27261901 (-) True LOC113540236
XM_026936091.2 mRNA upstream 135847 27287161 ~ 27310976 (-) True LOC113539949
XM_034304155.1 mRNA upstream 229861 27381175 ~ 27385533 (-) True si:ch211-107p11.3
TU85159 other downstream 48052 27096602 ~ 27100858 (-) True G71832
TU84853 other downstream 597880 26472080 ~ 26551030 (-) False G71596
TU84852 other downstream 597880 26537102 ~ 26551030 (-) False G71596
TU84653 other downstream 772822 26373758 ~ 26376088 (-) False ltb4r2b
TU83344 other downstream 2843984 24304374 ~ 24304926 (-) True G70255
TU85245 other upstream 52469 27203783 ~ 27204186 (-) True G71909
trnat-ugu_3 other upstream 244043 27395357 ~ 27395429 (-) True trnat-ugu_3
trnat-ugu_4 other upstream 244837 27396151 ~ 27396223 (-) True trnat-ugu_4
XR_003404034.2 other upstream 277106 27428420 ~ 27432678 (-) False LOC113540508
XR_004578066.1 other upstream 396438 27547752 ~ 27555986 (-) False pcyt1aa

Expression Profile