RNA id: TU85275


Basic Information

Item Value
RNA id TU85275
length 2498
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G71939
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27287173 ~ 27289705 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agagaattttaataatgttttaatgaatttgACAAAGACGTCAATAACAAAGCAGCAAATTGGAACATCACGTTTGATTATTGATAATGTCCAGAACCCTATACCTGCTATTTGACGATTCTGTGCAAACTGCAGAAGTTAACATGACGCATAATTTAATAGATCtatgtaaaacataaaaaaatatacttaaaGGCAAAATGGCAATGGTATAGTGGCAGTGGTGTGGTGGCAATGGAAGCCTGATTCTGCCACACATGGgaaaatattacacagattATCTCGCAACTGTGACTTTTTATCCTGAAGGTTAATCTCTCACATTTGCAACTTTTTATCTCACAATTGTTAATTAGTGTGACATTTTGCTTTCGCTTATTAGAGTATCCTTAACCCATAACTAAACTATTTATATCCCTTGCTTACGCACTGCTGCGTACGCTTGTGTTGTTGTGGTTTGATTATTGGAAACGGAAGCACTAAGTCAcgtgtgtgtgatattaacaagtagaaaaaaaataacacaagtactagattttaaaaaaaagtcgcaAGGGCATGATATTACCTCGCAACTGCAAGATCATTTTCTGcataatattttctcatatgAGGTAGAATCAAGCTTCCATACCAGGGAGCGTGACGAATGTTAAGTGTAAAGCCGGGATGTGCCAGTAATCGATTATACATCAACTGGCACAGGAGGAATGGGAAGAAGCAGATTTTATAGGTCATGGTGTTTATCCCAAACTCAAATCTAAGTATGCGACAGCAGCTGTCTCATAATATCATGCCACTGTTTCGCATAATGCAGCaccacagatttttttcacctgatttattaactcCTATGGAGAACTGCGTCTTTCACACAATCTGTTTTTGTAATTTGGGGTAGTTTTCACCTAAAAGTTTAAAATAGTGTGTGGAGTCAAGGCGAATAGATTAATTTATCACCTGACATGAAAGTAAGGAACAGAGATTGTGTGTAAAATACAACTatgaccatttttaaaaatcatttctcCAAATTATGTCTCAGCATTCTCAAAAATAACCAATTTCTCAAAACTTAACTTCGAACAATTTTGTTTCATACTTACACCTCCGACATCGAAAGCATTTTAATTTACcttataaacacacatgctAATATCTGCACTcttattttacattcatatttaattttgaaCAGCTTTCTGACTCACTGCCTTTAACCAGCATTATACTTGACATGTAATTTCAATGTAGGTTTAGTTTCACTCTTACAGATGTCTCTTTGAGACCTGAACTCACAGCTATCGAGAACAATTAGCGCACACAAAAATCCTGTTTAAATATTGCTTCCTTCCCTGACTTAGCACATGATGTTATTAATGCaaacaataatttataaatCACGTCCCACTATATGCACACGCAACCACTATATGCTAAATACACAGGCAAGTAATAGATAAACCAATAAACTGGCAATTCGTAACCAATAAACTGGCAAATTGCAGACCATgctttatttagaaaaattgttacttttttgtttgtttgttttttaaaagtaagAATGTAGCTGTATAGAATGTAGTATGGTTCTTGTAAAACTAGTGACACTGGGCTAAATCGACTTTAAATCAGTTACCACATACATTCATTATTTCGTACACAGAACAATTTTCCTCCACTGTCTTTGTACAGAATAATGATTTACACACCAGAgcattttactgtttaaagtaaatcaaataaatctTAGTAACTCAGTCTGATTCTGTCGTGACATACTTTAAATAAACTGCCTTAAAGGCACAATCAACGATTTTAGCCGGGCTGTTTCATAAATCAAAAGGATCTCAGTGTCCTCTCCAAAGCCATGCCCCTTAAACATGCACGTGTACTGTCCAAATGCTAATGCAAGCTGTGGGGCTTtctttgtcctgattggttaattgtCGGTGGTCCACatcttgtttcttttgtttatattcTGGAGCGCTATGGAGGTCAAAGTTTCTCCTCTGAGGAGATGTCCTAACTCAAACATCACTGATTACAGCTGTAATGTCTGAAAAGacatccctaatgagtgagttTGCTTAAAATCCTGCAGAATAAGAACACTTTTAGGGTATTATTGTGGACTTTTATATGGATATATGAACATGTAACATCTAATGTAAAAGTATATCACCCCAAGGATAATTATTcttctaattatttttaatttgaccAGATTCTGACTGTTTAAGTGCTCAGAGGTCTTCAGATGTAATAATACAACCTGCTCTATTGCCAATGAATAATTTTGGATGAGTTCAGGCCTTAAAAAAAGATAAGACACGATATGCATGACagtaaaagtattaaaaagtgagcGATTTAACAGCTGTGCACTAAACTGAGTTCTTCGCTCGACAAGAGACGCTCGAACACCTCGATCAGGCCTTTGAAGTCTACACGGTCCTCTGGAGCGTGAACCCAGCACCTCCGCATCTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85277 lncRNA upstream 2710 27284060 ~ 27284463 (+) True G71941
TU85207 lncRNA upstream 57073 27229862 ~ 27230100 (+) True G71874
TU85202 lncRNA upstream 68718 27218227 ~ 27218455 (+) True G71869
TU85201 lncRNA upstream 69334 27217352 ~ 27217839 (+) True G71868
TU85197 lncRNA upstream 90800 27196001 ~ 27196373 (+) True G71864
TU85279 lncRNA downstream 3651 27293356 ~ 27295364 (+) True G71942
TU85325 lncRNA downstream 81768 27371473 ~ 27371678 (+) True G71977
TU85328 lncRNA downstream 91143 27380848 ~ 27381072 (+) True G71980
TU85334 lncRNA downstream 115874 27405579 ~ 27406398 (+) False sgip1b
TU85353 lncRNA downstream 138714 27428419 ~ 27429222 (+) True G72005
XM_034303330.1 mRNA upstream 519 27274172 ~ 27286654 (+) True LOC113539841
XM_026935910.2 mRNA upstream 3444 27274172 ~ 27283729 (+) False LOC113539841
XM_026936094.2 mRNA upstream 16379 27265570 ~ 27270794 (+) True LOC113539951
XM_034304033.1 mRNA upstream 50076 27174061 ~ 27237097 (+) True LOC113540389
XM_034304034.1 mRNA upstream 50076 27174061 ~ 27237097 (+) False LOC113540389
XM_026937006.2 mRNA downstream 23372 27313077 ~ 27318012 (+) True LOC113540484
XM_026936714.2 mRNA downstream 36046 27325751 ~ 27371031 (+) True pde4bb
XM_034304151.1 mRNA downstream 95102 27384807 ~ 27405810 (+) True sgip1b
XM_034304152.1 mRNA downstream 95102 27384807 ~ 27405810 (+) False sgip1b
XM_034304153.1 mRNA downstream 95102 27384807 ~ 27405810 (+) False sgip1b
XR_003404108.2 other upstream 173919 27113148 ~ 27113254 (+) True LOC113540738
XR_003404105.1 other upstream 623091 26663971 ~ 26664082 (+) True LOC113540735
TU84616 other upstream 911394 26353189 ~ 26375779 (+) True LOC117597079
TU84618 other upstream 922940 26353189 ~ 26364233 (+) False LOC117597079
XR_003404060.2 other upstream 994389 26288294 ~ 26292784 (+) False zgc:66427
trnat-ugu_5 other downstream 199548 27489253 ~ 27489325 (+) True trnat-ugu_5
XR_003404069.1 other downstream 266812 27556517 ~ 27556648 (+) True LOC113540695
XR_003404070.2 other downstream 268060 27557765 ~ 27557902 (+) True LOC113540696
trnat-ugu_6 other downstream 330900 27620605 ~ 27620677 (+) True trnat-ugu_6
trnat-ugu_8 other downstream 331606 27621311 ~ 27621383 (+) True trnat-ugu_8

Expression Profile