RNA id: TU85325


Basic Information

Item Value
RNA id TU85325
length 206
lncRNA type inter_gene
GC content 0.25
exon number 1
gene id G71977
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27371473 ~ 27371678 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCCCTACAACAAAgttctgaaaataaatcaacttttacaagatactgtacatttagcacacagtagtatagtgtagtatagctATAcctatatatagatagatagataattagatatagatatagatatataataagtagaactacaaaaaaataaaaaataaagatcaaGAACACATGCTCGCtgcacaaaaatataataaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85279 lncRNA upstream 76109 27293356 ~ 27295364 (+) True G71942
TU85275 lncRNA upstream 81768 27287173 ~ 27289705 (+) True G71939
TU85277 lncRNA upstream 87010 27284060 ~ 27284463 (+) True G71941
TU85207 lncRNA upstream 141373 27229862 ~ 27230100 (+) True G71874
TU85202 lncRNA upstream 153018 27218227 ~ 27218455 (+) True G71869
TU85328 lncRNA downstream 9170 27380848 ~ 27381072 (+) True G71980
TU85334 lncRNA downstream 33901 27405579 ~ 27406398 (+) False sgip1b
TU85353 lncRNA downstream 56741 27428419 ~ 27429222 (+) True G72005
TU85362 lncRNA downstream 87992 27459670 ~ 27460197 (+) True G72012
XR_003404004.2 lncRNA downstream 112142 27483820 ~ 27487711 (+) True LOC113540179
XM_026936714.2 mRNA upstream 442 27325751 ~ 27371031 (+) True pde4bb
XM_026937006.2 mRNA upstream 53461 27313077 ~ 27318012 (+) True LOC113540484
XM_034303330.1 mRNA upstream 84819 27274172 ~ 27286654 (+) True LOC113539841
XM_026935910.2 mRNA upstream 87744 27274172 ~ 27283729 (+) False LOC113539841
XM_026936094.2 mRNA upstream 100679 27265570 ~ 27270794 (+) True LOC113539951
XM_034304151.1 mRNA downstream 13129 27384807 ~ 27405810 (+) True sgip1b
XM_034304152.1 mRNA downstream 13129 27384807 ~ 27405810 (+) False sgip1b
XM_034304153.1 mRNA downstream 13129 27384807 ~ 27405810 (+) False sgip1b
XM_026935917.2 mRNA downstream 13129 27384807 ~ 27405810 (+) False sgip1b
XM_026935916.2 mRNA downstream 15530 27387208 ~ 27405810 (+) False sgip1b
XR_003404108.2 other upstream 258219 27113148 ~ 27113254 (+) True LOC113540738
XR_003404105.1 other upstream 707391 26663971 ~ 26664082 (+) True LOC113540735
TU84616 other upstream 995694 26353189 ~ 26375779 (+) True LOC117597079
TU84618 other upstream 1007240 26353189 ~ 26364233 (+) False LOC117597079
XR_003404060.2 other upstream 1078689 26288294 ~ 26292784 (+) False zgc:66427
trnat-ugu_5 other downstream 117575 27489253 ~ 27489325 (+) True trnat-ugu_5
XR_003404069.1 other downstream 184839 27556517 ~ 27556648 (+) True LOC113540695
XR_003404070.2 other downstream 186087 27557765 ~ 27557902 (+) True LOC113540696
trnat-ugu_6 other downstream 248927 27620605 ~ 27620677 (+) True trnat-ugu_6
trnat-ugu_8 other downstream 249633 27621311 ~ 27621383 (+) True trnat-ugu_8

Expression Profile