Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU85334 |
| length | 820 |
| lncRNA type | sense_over |
| GC content | 0.42 |
| exon number | 1 |
| gene id | sgip1b |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 27384807 ~ 27406398 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU85328 | lncRNA | upstream | 24507 | 27380848 ~ 27381072 (+) | True | G71980 |
| TU85325 | lncRNA | upstream | 33901 | 27371473 ~ 27371678 (+) | True | G71977 |
| TU85279 | lncRNA | upstream | 110215 | 27293356 ~ 27295364 (+) | True | G71942 |
| TU85275 | lncRNA | upstream | 115874 | 27287173 ~ 27289705 (+) | True | G71939 |
| TU85277 | lncRNA | upstream | 121116 | 27284060 ~ 27284463 (+) | True | G71941 |
| TU85353 | lncRNA | downstream | 22021 | 27428419 ~ 27429222 (+) | True | G72005 |
| TU85362 | lncRNA | downstream | 53272 | 27459670 ~ 27460197 (+) | True | G72012 |
| XR_003404004.2 | lncRNA | downstream | 77422 | 27483820 ~ 27487711 (+) | True | LOC113540179 |
| XR_003404003.2 | lncRNA | downstream | 77433 | 27483831 ~ 27487711 (+) | False | LOC113540179 |
| TU85494 | lncRNA | downstream | 146729 | 27553127 ~ 27555706 (+) | True | G72118 |
| XM_026936714.2 | mRNA | upstream | 34548 | 27325751 ~ 27371031 (+) | True | pde4bb |
| XM_026937006.2 | mRNA | upstream | 87567 | 27313077 ~ 27318012 (+) | True | LOC113540484 |
| XM_034303330.1 | mRNA | upstream | 118925 | 27274172 ~ 27286654 (+) | True | LOC113539841 |
| XM_026935910.2 | mRNA | upstream | 121850 | 27274172 ~ 27283729 (+) | False | LOC113539841 |
| XM_026936094.2 | mRNA | upstream | 134785 | 27265570 ~ 27270794 (+) | True | LOC113539951 |
| XM_026937130.2 | mRNA | downstream | 3825 | 27410223 ~ 27412780 (+) | True | tctex1d1 |
| XM_026935918.2 | mRNA | downstream | 14887 | 27421285 ~ 27426694 (+) | True | bcl6ab |
| XM_026936528.2 | mRNA | downstream | 35111 | 27441509 ~ 27447248 (+) | True | fam78ba |
| XM_026937314.2 | mRNA | downstream | 53870 | 27460268 ~ 27466505 (+) | True | imp3 |
| XM_026936474.2 | mRNA | downstream | 61650 | 27468048 ~ 27477673 (+) | False | zgc:55943 |
| XR_003404108.2 | other | upstream | 292325 | 27113148 ~ 27113254 (+) | True | LOC113540738 |
| XR_003404105.1 | other | upstream | 741497 | 26663971 ~ 26664082 (+) | True | LOC113540735 |
| TU84616 | other | upstream | 1029800 | 26353189 ~ 26375779 (+) | True | LOC117597079 |
| TU84618 | other | upstream | 1041346 | 26353189 ~ 26364233 (+) | False | LOC117597079 |
| XR_003404060.2 | other | upstream | 1112795 | 26288294 ~ 26292784 (+) | False | zgc:66427 |
| trnat-ugu_5 | other | downstream | 82855 | 27489253 ~ 27489325 (+) | True | trnat-ugu_5 |
| XR_003404069.1 | other | downstream | 150119 | 27556517 ~ 27556648 (+) | True | LOC113540695 |
| XR_003404070.2 | other | downstream | 151367 | 27557765 ~ 27557902 (+) | True | LOC113540696 |
| trnat-ugu_6 | other | downstream | 214207 | 27620605 ~ 27620677 (+) | True | trnat-ugu_6 |
| trnat-ugu_8 | other | downstream | 214913 | 27621311 ~ 27621383 (+) | True | trnat-ugu_8 |
